Changes between Version 10 and Version 11 of HpcInfo


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Timestamp:
Jan 26, 2012 4:25:06 PM (10 years ago)
Author:
dzollars
Comment:

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  • HpcInfo

    v10 v11  
    2929== The LIMS job submit process ==
    3030
    31 In LIMS job submission happens in stages. In the first stage everything related to the data itself is collected and placed into a tar file. This includes the scan data itself, the edit profile, analysis parameters, and any noise files that have been selected. In the second stage, the job submission parameters are placed into a job submit file and the job is submitted. It is submitted as an HTTP request, where the job submission xml file is the body of the request and the tar file is sent as a base-64 encoded, chunk-split attachment. LIMS writes the parent HPCAnalysisRequest record in the LIMS database, as well as the analysis record for the job in the local gfac database, which contains the jobs from all the LIMS databases that are currently being processed.
     31In LIMS job submission happens in stages. In the first stage everything related to the data itself is collected and placed into a tar file. This includes the scan data itself, the edit profile, analysis parameters, and any noise files that have been selected. In the second stage, the job submission parameters are placed into a job submit file and the job is submitted. It is submitted as an HTTP request, where the job submission xml file is the body of the request and the tar file is sent as a base-64 encoded, chunk-split attachment. LIMS writes the parent HPCAnalysisRequest record in the LIMS database, as well as the analysis record for the job in the local gfac database. The analysis table in the local gfac database contains the jobs from all the LIMS databases that are currently being processed.
    3232
    3333== Supercomputer Queue ==
     
    6161== grid-control.php ==
    6262
    63 This php program is scheduled periodically via cron.  It checks the jobs in the local gfac analysis table (current jobs), and determines what actions to take, if any. Current status possibilities and the actions that are taken:
     63This php program is scheduled periodically via cron.  It checks the jobs in the local gfac analysis table (current jobs), and determines what actions to take, if any. Current status possibilities and the actions that are taken (:
    6464
    6565|| Current Status           || Actions taken                       || Timeout  || On timeout, change status to  ||