source: trunk/cleanup_gfac.php@ 21

Last change on this file since 21 was 18, checked in by gegorbet, 9 years ago

gridctl mods for Airavata 0.16 interface
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File size: 22.0 KB
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[7]1<?php
2/*
3 * cleanup_gfac.php
4 *
5 * functions relating to copying results and cleaning up the gfac DB
6 *
7 */
8
[18]9$us3bin = exec( "ls -d ~us3/lims/bin" );
[7]10include_once "$us3bin/listen-config.php";
11$me = 'cleanup_gfac.php';
12$email_address = '';
13$queuestatus = '';
14$jobtype = '';
15$db = '';
16$editXMLFilename = '';
17$status = '';
18
19function gfac_cleanup( $us3_db, $reqID, $gfac_link )
20{
21 global $dbhost;
22 global $user;
23 global $passwd;
24 global $db;
25 global $guser;
26 global $gpasswd;
27 global $gDB;
28 global $me;
29 global $work;
30 global $email_address;
31 global $queuestatus;
32 global $jobtype;
33 global $editXMLFilename;
34 global $submittime;
35 global $status;
36 global $stdout;
37 global $requestID;
38
39 $requestID = $reqID;
40 $db = $us3_db;
41 write_log( "$me: debug db=$db; requestID=$requestID" );
42
43 $us3_link = mysql_connect( $dbhost, $user, $passwd );
44
45 if ( ! $us3_link )
46 {
47 write_log( "$me: could not connect: $dbhost, $user, $passwd" );
48 mail_to_user( "fail", "Internal Error $requestID\nCould not connect to DB" );
49 return( -1 );
50 }
51
52 $result = mysql_select_db( $db, $us3_link );
53
54 if ( ! $result )
55 {
56 write_log( "$me: could not select DB $db" );
57 mail_to_user( "fail", "Internal Error $requestID\n$could not select DB $db" );
58 return( -1 );
59 }
60
61 // First get basic info for email messages
62 $query = "SELECT email, investigatorGUID, editXMLFilename FROM HPCAnalysisRequest " .
63 "WHERE HPCAnalysisRequestID=$requestID";
64 $result = mysql_query( $query, $us3_link );
65
66 if ( ! $result )
67 {
68 write_log( "$me: Bad query: $query" );
69 mail_to_user( "fail", "Internal Error $requestID\n$query\n" . mysql_error( $us3_link ) );
70 return( -1 );
71 }
72
73 list( $email_address, $investigatorGUID, $editXMLFilename ) = mysql_fetch_array( $result );
74
75 $query = "SELECT personID FROM people " .
76 "WHERE personGUID='$investigatorGUID'";
77 $result = mysql_query( $query, $us3_link );
78
79 list( $personID ) = mysql_fetch_array( $result );
80
81 /*
82 $query = "SELECT clusterName, submitTime, queueStatus, method " .
83 "FROM HPCAnalysisRequest h LEFT JOIN HPCAnalysisResult " .
84 "ON h.HPCAnalysisRequestID=HPCAnalysisResult.HPCAnalysisRequestID " .
85 "WHERE h.HPCAnalysisRequestID=$requestID";
86 */
87 $query = "SELECT clusterName, submitTime, queueStatus, method " .
88 "FROM HPCAnalysisRequest h, HPCAnalysisResult r " .
89 "WHERE h.HPCAnalysisRequestID=$requestID " .
90 "AND h.HPCAnalysisRequestID=r.HPCAnalysisRequestID";
91
92 $result = mysql_query( $query, $us3_link );
93
94 if ( ! $result )
95 {
96 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
97 return( -1 );
98 }
99
100 if ( mysql_num_rows( $result ) == 0 )
101 {
102 write_log( "$me: US3 Table error - No records for requestID: $requestID" );
103 return( -1 );
104 }
105
106 list( $cluster, $submittime, $queuestatus, $jobtype ) = mysql_fetch_array( $result );
107
108 // Get the GFAC ID
109 $query = "SELECT HPCAnalysisResultID, gfacID FROM HPCAnalysisResult " .
110 "WHERE HPCAnalysisRequestID=$requestID";
111
112 $result = mysql_query( $query, $us3_link );
113
114 if ( ! $result )
115 {
116 write_log( "$me: Bad query: $query" );
117 mail_to_user( "fail", "Internal Error $requestID\n$query\n" . mysql_error( $us3_link ) );
118 return( -1 );
119 }
120
121 list( $HPCAnalysisResultID, $gfacID ) = mysql_fetch_array( $result );
122
123 ////////
124 // Get data from global GFAC DB and insert it into US3 DB
125 // $gfac_link = mysql_connect( $dbhost, $guser, $gpasswd );
126
127 $result = mysql_select_db( $gDB, $gfac_link );
128
129 if ( ! $result )
130 {
131 write_log( "$me: Could not connect to DB $gDB" );
132 mail_to_user( "fail", "Internal Error $requestID\nCould not connect to DB $gDB" );
133 return( -1 );
134 }
135
136 $query = "SELECT status, cluster, id FROM analysis " .
137 "WHERE gfacID='$gfacID'";
138
139 $result = mysql_query( $query, $gfac_link );
140 if ( ! $result )
141 {
142 write_log( "$me: Could not select GFAC status for $gfacID" );
143 mail_to_user( "fail", "Could not select GFAC status for $gfacID" );
144 return( -1 );
145 }
146
147 $num_rows = mysql_num_rows( $result );
148 if ( $num_rows == 0 )
149 {
150 write_log( "$me: Cleanup analysis query found 0 entries for $gfacID" );
151 return( 0 );
152 }
153//else
154//{
155//write_log( "$me: db=$db; num_rows=$num_rows; queuestatus=$queuestatus" );
156//}
157
158 list( $status, $cluster, $id ) = mysql_fetch_array( $result );
159//write_log( "$me: db=$db; requestID=$requestID; status=$status; cluster=$cluster" );
160
161 if ( $cluster == 'bcf-local' || $cluster == 'alamo-local' )
162 {
163 $clushost = $cluster;
164 $clushost = preg_replace( "/\-local/", "", $clushost );
165 get_local_files( $gfac_link, $clushost, $requestID, $id, $gfacID );
166 }
167
168 $query = "SELECT id, stderr, stdout, tarfile FROM analysis " .
169 "WHERE gfacID='$gfacID'";
170
171 $result = mysql_query( $query, $gfac_link );
172
173 if ( ! $result )
174 {
175 write_log( "$me: Bad query:\n$query\n" . mysql_error( $gfac_link ) );
176 mail_to_user( "fail", "Internal error " . mysql_error( $gfac_link ) );
177 return( -1 );
178 }
179
180 $num_rows = mysql_num_rows( $result );
181 if ( $num_rows == 0 )
182 {
183 write_log( "$me: Cleanup analysis query found 0 entries for $gfacID" );
184 return( 0 );
185 }
186
187 list( $analysisID, $stderr, $stdout, $tarfile ) = mysql_fetch_array( $result );
188
189 if ( strlen( $tarfile ) > 0 )
190 { // Log success at fetch attempt
191 write_log( "$me: Successful data fetch: $requestID $gfacID" );
192 }
193 else
194 { // Log failure at fetch attempt
195 write_log( "$me: Failed data fetch: $requestID $gfacID" );
196 if ( $analysisID == '' )
197 $analysisID = '0';
198 }
199
200 // Save queue messages for post-mortem analysis
201 $query = "SELECT message, time FROM queue_messages " .
202 "WHERE analysisID = $analysisID " .
203 "ORDER BY time ";
204 $result = mysql_query( $query, $gfac_link );
205
206 if ( ! $result )
207 {
208 // Just log it and continue
209 write_log( "$me: Bad query:\n$query\n" . mysql_error( $gfac_link ) );
210 }
211
212 $now = date( 'Y-m-d H:i:s' );
213 $message_log = "US3 DB: $db\n" .
214 "RequestID: $requestID\n" .
215 "GFAC ID: $gfacID\n" .
216 "Processed: $now\n\n" .
217 "Queue Messages\n\n" ;
218
219 $need_finish = ( $status == 'COMPLETE' );
220
221 if ( mysql_num_rows( $result ) > 0 )
222 {
223 $time_msg = time();
224 while ( list( $message, $time ) = mysql_fetch_array( $result ) )
225 {
226//write_log( "$me: message=$message" );
227 $message_log .= "$time $message\n";
228 if ( preg_match( "/^Finished/i", $message ) )
229 $need_finish = false;
230 $time_msg = strtotime( $time );
231 }
232
233 if ( $need_finish )
234 { // No 'Finished' yet: forget if too much time has passed
235 $time_now = time();
236 $tdelta = $time_now - $time_msg;
237write_log( "$me: no-Finish time: tnow=$time_now, tmsg=$time_msg, tdelt=$tdelta" );
238 if ( $tdelta > 600 )
239 $need_finish = false;
240 }
241//write_log( "$me: no-Finish time: tnow=$time_now, tmsg=$time_msg, tdelt=$tdelta" );
242 }
243 else
244 {
245 write_log( "$me: No messages for analysisID=$analysisID ." );
246 $need_finish = false;
247 }
248
249 if ( $need_finish )
250 {
251 write_log( "$me: Cleanup has not yet found 'Finished' for $gfacID" );
252 return( 0 );
253 }
254
255 $query = "DELETE FROM queue_messages " .
256 "WHERE analysisID = $analysisID ";
257
258 $result = mysql_query( $query, $gfac_link );
259
260 if ( ! $result )
261 {
262 // Just log it and continue
263 write_log( "$me: Bad query:\n$query\n" . mysql_error( $gfac_link ) );
264 }
265
266 // Save stdout, stderr, etc. for message log
267 $query = "SELECT stdout, stderr, status, queue_msg FROM analysis " .
268 "WHERE gfacID='$gfacID' ";
269 $result = mysql_query( $query, $gfac_link );
270 try
271 {
272 // What if this is too large?
273 list( $stdout, $stderr, $status, $queue_msg ) = mysql_fetch_array( $result );
274 }
275 catch ( Exception $e )
276 {
277 write_log( "$me: stdout + stderr larger than 128M - $gfacID\n" . mysql_error( $gfac_link ) );
278 // Just go ahead and clean up
279 }
280
281 // But let's allow for investigation of other large stdout and/or stderr
282 if ( strlen( $stdout ) > 20480000 ||
283 strlen( $stderr ) > 20480000 )
284 write_log( "$me: stdout + stderr larger than 20M - $gfacID\n" );
285
286 $message_log .= "\n\n\nStdout Contents\n\n" .
287 $stdout .
288 "\n\n\nStderr Contents\n\n" .
289 $stderr .
290 "\n\n\nGFAC Status: $status\n" .
291 "GFAC message field: $queue_msg\n";
292
293 // Delete data from GFAC DB
294 $query = "DELETE from analysis WHERE gfacID='$gfacID'";
295
296 $result = mysql_query( $query, $gfac_link );
297
298 if ( ! $result )
299 {
300 // Just log it and continue
301 write_log( "$me: Bad query:\n$query\n" . mysql_error( $gfac_link ) );
302 }
303write_log( "$me: GFAC DB entry deleted" );
304
305 // Copy queue messages to LIMS submit directory (files there are deleted after 7 days)
306 global $submit_dir;
307
308 // Get the request guid (LIMS submit dir name)
309 $query = "SELECT HPCAnalysisRequestGUID FROM HPCAnalysisRequest " .
310 "WHERE HPCAnalysisRequestID = $requestID ";
311 $result = mysql_query( $query, $us3_link );
312
313 if ( ! $result )
314 {
315 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
316 }
317
318 list( $requestGUID ) = mysql_fetch_array( $result );
319 $output_dir = "$submit_dir/$requestGUID";
320write_log( "$me: Output dir determined: $output_dir" );
321
322 // Try to create it if necessary, and write the file
323 // Let's use FILE_APPEND, in case this is the second time around and the
324 // GFAC job status was INSERTed, rather than UPDATEd
325 if ( ! is_dir( $output_dir ) )
326 mkdir( $output_dir, 0775, true );
327 $message_filename = "$output_dir/$db-$requestID-messages.txt";
328 file_put_contents( $message_filename, $message_log, FILE_APPEND );
329 // mysql_close( $gfac_link );
330//write_log( "$me: *messages.txt written" );
331
332 /////////
333 // Insert data into HPCAnalysis
334
335 $query = "UPDATE HPCAnalysisResult SET " .
336 "stderr='" . mysql_real_escape_string( $stderr, $us3_link ) . "', " .
337 "stdout='" . mysql_real_escape_string( $stdout, $us3_link ) . "' " .
338 "WHERE HPCAnalysisResultID=$HPCAnalysisResultID";
339
340 $result = mysql_query( $query, $us3_link );
341
342 if ( ! $result )
343 {
344 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
345 mail_to_user( "fail", "Bad query:\n$query\n" . mysql_error( $us3_link ) );
346 return( -1 );
347 }
348//write_log( "$me: HPCAnalysisResult stderr,stdout updated" );
349
350 // Save the tarfile and expand it
351
352 if ( strlen( $tarfile ) == 0 )
353 {
354 write_log( "$me: No tarfile" );
355 mail_to_user( "fail", "No results" );
356 return( -1 );
357 }
358
359 // Shouldn't happen
360 if ( ! is_dir( "$work" ) )
361 {
362 write_log( "$me: $work directory does not exist" );
363 mail_to_user( "fail", "$work directory does not exist" );
364 return( -1 );
365 }
366
367 if ( ! is_dir( "$work/$gfacID" ) ) mkdir( "$work/$gfacID", 0770 );
368 chdir( "$work/$gfacID" );
369
370 $f = fopen( "analysis.tar", "w" );
371 fwrite( $f, $tarfile );
372 fclose( $f );
373write_log( "$me: analysis.tar file written to work dir" );
374
375 $tar_out = array();
376 exec( "tar -xf analysis.tar 2>&1", $tar_out, $err );
377
378 if ( $err != 0 )
379 {
380 chdir( $work );
381 exec( "rm -r $gfacID" );
382 $output = implode( "\n", $tar_out );
383
384 write_log( "$me: Bad output tarfile: $output" );
385 mail_to_user( "fail", "Bad output file" );
386 return( -1 );
387 }
388//write_log( "$me: tar files extracted" );
389
390 // Insert the model files and noise files
391 $files = file( "analysis_files.txt", FILE_IGNORE_NEW_LINES );
392 $noiseIDs = array();
393 $modelGUIDs = array();
394 $mrecsIDs = array();
395 $rmodlGUIDs = array();
396
397 foreach ( $files as $file )
398 {
399 $split = explode( ";", $file );
400
401 if ( count( $split ) > 1 )
402 {
403 list( $fn, $meniscus, $mc_iteration, $variance ) = explode( ";", $file );
404
405 list( $other, $mc_iteration ) = explode( "=", $mc_iteration );
406 list( $other, $variance ) = explode( "=", $variance );
407 list( $other, $meniscus ) = explode( "=", $meniscus );
408 }
409 else
410 $fn = $file;
411
412 if ( preg_match( "/mdl.tmp$/", $fn ) )
413 continue;
414
415 if ( filesize( $fn ) < 100 )
416 {
417 write_log( "$me:fn is invalid $fn" );
418 mail_to_user( "fail", "Internal error\n$fn is invalid" );
419 return( -1 );
420 }
421//write_log( "$me: handling file: $fn" );
422
423 if ( preg_match( "/^job_statistics\.xml$/", $fn ) ) // Job statistics file
424 {
425 $xml = file_get_contents( $fn );
426 $statistics = parse_xml( $xml, 'statistics' );
427 $otherdata = parse_xml( $xml, 'id' );
428
429 $query = "UPDATE HPCAnalysisResult SET " .
430 "wallTime = {$statistics['walltime']}, " .
431 "CPUTime = {$statistics['cputime']}, " .
432 "CPUCount = {$statistics['cpucount']}, " .
433 "max_rss = {$statistics['maxmemory']}, " .
434 "startTime = '{$otherdata['starttime']}', " .
435 "endTime = '{$otherdata['endtime']}', " .
436 "mgroupcount = {$otherdata['groupcount']} " .
437 "WHERE HPCAnalysisResultID=$HPCAnalysisResultID";
438 $result = mysql_query( $query, $us3_link );
439
440 if ( ! $result )
441 {
442 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
443 }
444
445 file_put_contents( "$output_dir/$fn", $xml ); // Copy to submit dir
446 $file_type = "job_stats";
447//write_log( "$me: job_statistics file updated in Result and written" );
448
449 }
450
451 else if ( preg_match( "/\.noise/", $fn ) > 0 ) // It's a noise file
452 {
453 $xml = file_get_contents( $fn );
454 $noise_data = parse_xml( $xml, "noise" );
455 $type = ( $noise_data[ 'type' ] == "ri" ) ? "ri_noise" : "ti_noise";
456 $desc = $noise_data[ 'description' ];
457 $modelGUID = $noise_data[ 'modelGUID' ];
458 $noiseGUID = $noise_data[ 'noiseGUID' ];
459
460 $query = "INSERT INTO noise SET " .
461 "noiseGUID='$noiseGUID'," .
462 "modelGUID='$modelGUID'," .
463 "editedDataID=1, " .
464 "modelID=1, " .
465 "noiseType='$type'," .
466 "description='$desc'," .
467 "xml='" . mysql_real_escape_string( $xml, $us3_link ) . "'";
468
469 // Add later after all files are processed: editDataID, modelID
470
471 $result = mysql_query( $query, $us3_link );
472
473 if ( ! $result )
474 {
475 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
476 mail_to_user( "fail", "Internal error\n$query\n" . mysql_error( $us3_link ) );
477 return( -1 );
478 }
479
480 $id = mysql_insert_id( $us3_link );
481 $file_type = "noise";
482 $noiseIDs[] = $id;
483
484 // Keep track of modelGUIDs for later, when we replace them
485 $modelGUIDs[ $id ] = $modelGUID;
486//write_log( "$me: noise file inserted into DB : id=$id" );
487
488 }
489
490 else if ( preg_match( "/\.mrecs/", $fn ) > 0 ) // It's an mrecs file
491 {
492 $xml = file_get_contents( $fn );
493 $mrecs_data = parse_xml( $xml, "modelrecords" );
494 $desc = $mrecs_data[ 'description' ];
495 $editGUID = $mrecs_data[ 'editGUID' ];
496write_log( "$me: mrecs file editGUID=$editGUID" );
497 if ( strlen( $editGUID ) < 36 )
498 $editGUID = "12345678-0123-5678-0123-567890123456";
499 $mrecGUID = $mrecs_data[ 'mrecGUID' ];
500 $modelGUID = $mrecs_data[ 'modelGUID' ];
501
502 $query = "INSERT INTO pcsa_modelrecs SET " .
503 "editedDataID=" .
504 "(SELECT editedDataID FROM editedData WHERE editGUID='$editGUID')," .
505 "modelID=0, " .
506 "mrecsGUID='$mrecGUID'," .
507 "description='$desc'," .
508 "xml='" . mysql_real_escape_string( $xml, $us3_link ) . "'";
509
510 // Add later after all files are processed: editDataID, modelID
511
512 $result = mysql_query( $query, $us3_link );
513
514 if ( ! $result )
515 {
516 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
517 mail_to_user( "fail", "Internal error\n$query\n" . mysql_error( $us3_link ) );
518 return( -1 );
519 }
520
521 $id = mysql_insert_id( $us3_link );
522 $file_type = "mrecs";
523 $mrecsIDs[] = $id;
524
525 // Keep track of modelGUIDs for later, when we replace them
526 $rmodlGUIDs[ $id ] = $modelGUID;
527//write_log( "$me: mrecs file inserted into DB : id=$id" );
528 }
529
530 else // It's a model file
531 {
532 $xml = file_get_contents( $fn );
533 $model_data = parse_xml( $xml, "model" );
534 $description = $model_data[ 'description' ];
535 $modelGUID = $model_data[ 'modelGUID' ];
536 $editGUID = $model_data[ 'editGUID' ];
537
538 if ( $mc_iteration > 1 )
539 {
540//write_log( "$me: MODELUpd: mc_iteration=$mc_iteration" );
541 $miter = sprintf( "_mcN%03d", $mc_iteration );
542//write_log( "$me: MODELUpd: miter=$miter" );
543//write_log( "$me: MODELUpd: I:description=$description" );
544 $description = preg_replace( "/_mc[0-9]+/", $miter, $description );
545write_log( "$me: MODELUpd: O:description=$description" );
546 }
547
548 $query = "INSERT INTO model SET " .
549 "modelGUID='$modelGUID'," .
550 "editedDataID=" .
551 "(SELECT editedDataID FROM editedData WHERE editGUID='$editGUID')," .
552 "description='$description'," .
553 "MCIteration='$mc_iteration'," .
554 "meniscus='$meniscus'," .
555 "variance='$variance'," .
556 "xml='" . mysql_real_escape_string( $xml, $us3_link ) . "'";
557
558 $result = mysql_query( $query, $us3_link );
559
560 if ( ! $result )
561 {
562 write_log( "$me: Bad query:\n$query " . mysql_error( $us3_link ) );
563 mail_to_user( "fail", "Internal error\n$query\n" . mysql_error( $us3_link ) );
564 return( -1 );
565 }
566
567 $modelID = mysql_insert_id( $us3_link );
568 $id = $modelID;
569 $file_type = "model";
570
571 $query = "INSERT INTO modelPerson SET " .
572 "modelID=$modelID, personID=$personID";
573 $result = mysql_query( $query, $us3_link );
574//write_log( "$me: model file inserted into DB : id=$id" );
575 }
576
577 $query = "INSERT INTO HPCAnalysisResultData SET " .
578 "HPCAnalysisResultID='$HPCAnalysisResultID', " .
579 "HPCAnalysisResultType='$file_type', " .
580 "resultID=$id";
581
582 $result = mysql_query( $query, $us3_link );
583
584 if ( ! $result )
585 {
586 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
587 mail_to_user( "fail", "Internal error\n$query\n" . mysql_error( $us3_link ) );
588 return( -1 );
589 }
590//write_log( "$me: ResultData updated : file_type=$file_type" );
591 }
592
593 // Now fix up noise entries
594 // For noise files, there is, at most two: ti_noise and ri_noise
595 // In this case there will only be one modelID
596
597 foreach ( $noiseIDs as $noiseID )
598 {
599 $modelGUID = $modelGUIDs[ $noiseID ];
600 $query = "UPDATE noise SET " .
601 "editedDataID=" .
602 "(SELECT editedDataID FROM model WHERE modelGUID='$modelGUID')," .
603 "modelID=" .
604 "(SELECT modelID FROM model WHERE modelGUID='$modelGUID')" .
605 "WHERE noiseID=$noiseID";
606
607 $result = mysql_query( $query, $us3_link );
608
609 if ( ! $result )
610 {
611 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
612 mail_to_user( "fail", "Bad query\n$query\n" . mysql_error( $us3_link ) );
613 return( -1 );
614 }
615//write_log( "$me: noise entry updated : noiseID=$noiseID" );
616 }
617//write_log( "$me: noise entries updated" );
618
619 // Now possibly fix up mrecs entries
620
621 foreach ( $mrecsIDs as $mrecsID )
622 {
623 $modelGUID = $rmodlGUIDs[ $mrecsID ];
624 $query = "UPDATE pcsa_modelrecs SET " .
625 "modelID=" .
626 "(SELECT modelID FROM model WHERE modelGUID='$modelGUID')" .
627 "WHERE mrecsID=$mrecsID";
628
629 $result = mysql_query( $query, $us3_link );
630
631 if ( ! $result )
632 {
633 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
634 mail_to_user( "fail", "Bad query\n$query\n" . mysql_error( $us3_link ) );
635 return( -1 );
636 }
637//write_log( "$me: mrecs entry updated : mrecsID=$mrecsID" );
638 }
639//write_log( "$me: mrecs entries updated" );
640
641 // Copy results to LIMS submit directory (files there are deleted after 7 days)
642 global $submit_dir; // LIMS submit files dir
643
644 // Get the request guid (LIMS submit dir name)
645 $query = "SELECT HPCAnalysisRequestGUID FROM HPCAnalysisRequest " .
646 "WHERE HPCAnalysisRequestID = $requestID ";
647 $result = mysql_query( $query, $us3_link );
648
649 if ( ! $result )
650 {
651 write_log( "$me: Bad query:\n$query\n" . mysql_error( $us3_link ) );
652 }
653
654 list( $requestGUID ) = mysql_fetch_array( $result );
655
656 chdir( "$submit_dir/$requestGUID" );
657 $f = fopen( "analysis.tar", "w" );
658 fwrite( $f, $tarfile );
659 fclose( $f );
660
661 // Clean up
662 chdir ( $work );
663 // exec( "rm -rf $gfacID" );
664
665 mysql_close( $us3_link );
666
667 /////////
668 // Send email
669
670 mail_to_user( "success", "" );
671}
672
673?>
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