Timeline


and

Jun 1, 2011:

7:00 PM Changeset [1091] by dubbs
Version 1,0
6:51 PM Changeset [1090] by dubbs
Typo
6:49 PM Changeset [1089] by dubbs
Bring back end up tp date
5:17 PM Ticket #228 (lims3 queuing message incorrect) closed by demeler
worksforme: Replying to bdubbs: > I don't have enough info to track …
1:58 PM OGCEMonitoring edited by raminders
(diff)
1:55 PM OGCEMonitoring edited by raminders
(diff)
12:53 PM Ticket #224 (us_convert - crashes when committing demo1_intensity) closed by demeler
fixed: Replying to dzollars: > This was a very difficult problem …
5:58 AM Changeset [1088] by zollarsd
Fixed some database interface code Changed error handling in a couple …
3:52 AM OGCEMonitoring edited by raminders
(diff)
3:49 AM OGCEMonitoring edited by raminders
(diff)
3:38 AM OGCEMonitoring edited by raminders
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3:37 AM OGCEMonitoring edited by raminders
(diff)
3:37 AM OGCEMonitoring edited by raminders
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3:14 AM OGCEMonitoring edited by raminders
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3:14 AM OGCEMonitoring edited by raminders
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3:11 AM OGCEMonitoring edited by raminders
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3:10 AM OGCEMonitoring edited by raminders
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3:10 AM Ticket #225 (noise files are not merged yet) closed by demeler
fixed: > Trying right now...should have the answer in less than 10 minutes …
2:40 AM OGCEMonitoring edited by raminders
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2:40 AM OGCEMonitoring edited by raminders
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2:26 AM OGCEMonitoring edited by raminders
(diff)

May 31, 2011:

11:52 PM Changeset [1087] by dubbs
Noise errors are non-zero integers
9:30 PM OGCEMonitoring created by raminders
9:28 PM OGCEIntegration edited by raminders
(diff)
9:25 PM OGCEIntegration edited by raminders
(diff)
9:24 PM OGCEIntegration edited by raminders
(diff)
9:09 PM Ticket #228 (lims3 queuing message incorrect) created by demeler
I submitted 5 separate 2DSA jobs from the demo1_intensity dataset …
8:42 PM Changeset [1086] by gegorbet
Some clean-up. Annotated plot cursor, plus vertical line if mouse …
7:24 PM Ticket #227 (Firewall problem?) closed by bdubbs
worksforme: I'm going to mark this as invalid from a US3 standpoint. The …
7:00 PM Ticket #227 (Firewall problem?) created by wenta
I have installed usIII on my office computer and had a registration …
6:20 PM Ticket #213 (meniscus fit information from backend not available in meniscus fitter) closed by dzollars
fixed
6:17 PM Changeset [1085] by gegorbet
Further mod so most actions have no extra Success/Cancel? dialog (2 …
5:44 PM Ticket #223 (edit profiles didn't match) closed by dzollars
fixed
5:07 PM Ticket #219 (us_ga_initialize - orphaned pushbutton appears in upper left corner) closed by dzollars
fixed
5:07 PM Ticket #214 (GA Init routine overlap) closed by dzollars
fixed
4:19 PM Ticket #196 (us_analyte - DNA entries lose MW from sequence) closed by dzollars
fixed
4:18 PM Changeset [1084] by zollarsd
Set DNA/RNA mw properly.
3:56 PM Changeset [1083] by gegorbet
Fix to fit_meniscus to handle meniscus values less than 6.0; Mod in …
3:52 PM Ticket #226 (Spelling error on registration activation page) closed by bdubbs
fixed: Spelling has been fixed. The message info for both emails is …
2:21 PM Changeset [1082] by gegorbet
Intermediate commit with fix for spurious meniscus,rmsd values. Code …
7:41 AM Ticket #226 (Spelling error on registration activation page) created by emre
When I activated my local compile of us3 (slack 13.1, no issues), the …
4:16 AM Ticket #225 (noise files are not merged yet) created by demeler
I did the following sequence of fits on the same dataset: 1. ti only …
3:50 AM Ticket #209 (backend 2DSA is going way too slow) reopened by demeler
I am opening this ticket again. While the speed has improved, I have …
3:29 AM Changeset [1081] by dubbs
Display vertical 'rubber band' in us_convert
12:41 AM Ticket #224 (us_convert - crashes when committing demo1_intensity) created by demeler
This only happens after a very special sequence, which is explained …

May 30, 2011:

9:26 PM Ticket #223 (edit profiles didn't match) created by demeler
Bear with me, this is a long one... I edited a dataset and saved …
4:47 PM Changeset [1080] by gegorbet
Possible last commit of fit_meniscus before workshop: now deletes all …
4:42 PM Changeset [1079] by dubbs
Fix saving of mw for RNA/DNA analytes
12:59 PM Ticket #196 (us_analyte - DNA entries lose MW from sequence) reopened by demeler
Apparently the MW for DNA/RNA is still not saved in the database. If …

May 29, 2011:

9:54 PM Changeset [1078] by gegorbet
Next-stage commit - a few fixes and upgrades. More to follow.
9:39 PM SOMO2-SOMO3 edited by bdubbs
(diff)
8:54 PM Ticket #144 (Items we need for the workshop) closed by bdubbs
duplicate: I'm going to close this in favor of a page on the wiki: …
8:52 PM WorkShopPrep created by bdubbs
8:40 PM WikiStart edited by bdubbs
(diff)
4:55 PM Ticket #218 (us_fematch - cannot load noise files) closed by demeler
fixed: Replying to gegorbet: > The latest commit includes a fix …
4:05 PM Changeset [1077] by gegorbet
Fix so models-with-noise are presented, even when a loaded model does …
12:39 AM Ticket #222 (us_fematch - GA model mismatches) created by demeler
There is still another problem with the ga and the fematch programs. …
12:31 AM Ticket #132 (US3 for WIN32) closed by demeler
fixed

May 28, 2011:

11:38 PM Ticket #220 (us_predict2 - vbar field is not updated from database) closed by demeler
fixed
11:37 PM Ticket #216 (Problem with registration for Ultrascan III build 1050 WindowsXP beta) closed by demeler
fixed: Replying to bdubbs: > OK, I added: > > Content-Type: …
11:12 PM Changeset [1076] by dubbs
Efficiency changes to GA
10:33 PM Changeset [1075] by dubbs
Correct us_predit2 for update to us_analysis_gui.
9:54 PM Changeset [1074] by demeler
updated manual to add us_predict2 manual, and updated linux distro …
9:32 PM Ticket #221 (us_predict1/2 - add solution button) created by demeler
In addition to the density, viscosity and vbar buttons, it would be …
9:30 PM Ticket #220 (us_predict2 - vbar field is not updated from database) created by demeler
the vbar field does not get updated when an analyte is picked from the …
9:00 PM Changeset [1073] by dubbs
Only uppercase ascii letters to be able to handle unicode characters …
3:37 PM Changeset [1072] by gegorbet
Fix so unused Shrink Buckets button is not visible.
2:51 PM Ticket #219 (us_ga_initialize - orphaned pushbutton appears in upper left corner) created by demeler
Check the geometry management - the shrink bucket button is …
2:50 PM Ticket #218 (us_fematch - cannot load noise files) created by demeler
Some change caused noise files to be inaccessible in fematch - please …
4:13 AM Changeset [1071] by gegorbet
Fixed bug in picking up meniscus value on local file read
3:34 AM Changeset [1070] by dubbs
Update credits

May 27, 2011:

11:11 PM Changeset [1069] by gegorbet
Next-stage commit: edit record now updated in DB for meniscus.
10:35 PM Milestone beta completed
6:43 PM Changeset [1068] by gegorbet
Intermediate commit: can now build fit files from DB scan.
12:51 PM Changeset [1067] by demeler
added libssl.so.0
4:32 AM Changeset [1066] by dubbs
Fix doxygen spelling errors
2:09 AM Changeset [1065] by dubbs
Update back end for new model members.
2:03 AM Changeset [1064] by gegorbet
Mods to deal with new variance,meniscus in model DB record.

May 26, 2011:

11:56 PM Changeset [1063] by gegorbet
Check for bin overlaps, both at save and via button.
10:37 PM Ticket #217 (ga backend takes too long) created by demeler
Run times for GA jobs running on the backend take unreasonably long. …
10:10 PM Changeset [1062] by zollarsd
Added variance and meniscus value to model procedures
9:26 PM get_model_info edited by dzollars
(diff)
9:23 PM get_model_desc edited by dzollars
(diff)
9:18 PM update_model edited by dzollars
(diff)
9:16 PM new_model edited by dzollars
(diff)
7:23 PM Ticket #215 (uslims3/us_ga_init - buckets overlap) closed by dzollars
fixed
6:42 PM Ticket #207 (uslims - noise selection not working) closed by dzollars
fixed
1:02 PM Changeset [1061] by demeler
updates that include additional libraries needed on various target systems
8:08 AM Ticket #216 (Problem with registration for Ultrascan III build 1050 WindowsXP beta) created by wenta
I have successfully registered for a USLIMS III instance. But it was …

May 25, 2011:

10:26 PM Ticket #210 (back-end update e-mail messages) closed by bdubbs
fixed: Getting the meniscus info to us_fit_meniscus is #213.
10:03 PM Changeset [1060] by demeler
Added a script for builing a linux distro. This is a template file …
9:42 PM Changeset [1059] by gegorbet
Intermediate commit: fix special case where auto-assign allowed an …
8:39 PM Changeset [1058] by zollarsd
Added stored procedure to delete HPC analysis and related tables
8:37 PM delete_HPCRequest created by dzollars
8:31 PM MySQLStoredProcedureAPI edited by dzollars
(diff)
7:05 PM Changeset [1057] by dubbs
Sum noise syntax fix
7:01 PM Changeset [1056] by dubbs
Sum noise corrections
6:45 PM Changeset [1055] by dubbs
Add Windows fromat icon Add input noise to calculated noise in back end
5:20 PM Changeset [1054] by gegorbet
Mods to 2dsa for FE/BE model/noise description conventions and to sum …
5:14 PM WikiStart edited by bdubbs
(diff)
4:43 PM Changeset [1053] by dubbs
Tweak model/noise description
4:29 PM Changeset [1052] by dubbs
Tweak model/noise description
4:36 AM Ticket #208 (uslims - meniscus calculation is not displayed) closed by bdubbs
fixed: Added a space to the user message. Updated alamo, bcf, ranger, …
4:06 AM Changeset [1051] by dubbs
Update model and noise description when writing output Fix worker …
2:50 AM Ticket #215 (uslims3/us_ga_init - buckets overlap) created by demeler
Attached is a ga initialization file that was generated using the …
2:10 AM Ticket #201 (2dsa - issues when switching between triples) closed by demeler
fixed: I checked switching from triples with and without noise, and back …

May 24, 2011:

11:46 PM Changeset [1050] by gegorbet
Fixes for noise retain/reselect with reselected triple.
10:28 PM Ticket #200 (Constraints on HPCAnalysisResultData table not working) closed by dzollars
fixed: The noise foreign key constraint has been dropped in all databases.
10:22 PM Changeset [1049] by zollarsd
Dropped foreign key constraints on the HPCAnalysisResultData table
9:55 PM Ticket #185 (genetic algorithm control window fixes) closed by dzollars
fixed
9:54 PM Ticket #214 (GA Init routine overlap) created by dzollars
In the case where the user creates buckets manually, create a scheme …
9:43 PM Ticket #198 (noise loader) closed by dzollars
fixed
9:32 PM Ticket #134 (LIMS3 Cluster Status) closed by dzollars
fixed
9:29 PM Ticket #209 (backend 2DSA is going way too slow) closed by dzollars
fixed
9:28 PM Ticket #212 (noise-model ID linkage in DB) closed by dzollars
fixed
9:10 PM Ticket #47 (Global Equilibrium Analysis) closed by dzollars
duplicate
9:06 PM Ticket #211 (us_convert - "Show Intensity Profile" causes program to crash) closed by dzollars
fixed
9:01 PM Ticket #179 (queue viewer delete function) closed by dzollars
fixed
8:45 PM Ticket #175 (LIMS queue viewer won't delete job on bcf) closed by dzollars
wontfix
8:44 PM Ticket #145 (Add capcha to new lims request web page) closed by dzollars
fixed
8:39 PM Ticket #206 (us_convert - erases contents of data directory when loading us3 run ...) closed by dzollars
fixed
8:34 PM Ticket #205 (us_convert - committing to DB fails) closed by dzollars
fixed
7:18 PM Ticket #213 (meniscus fit information from backend not available in meniscus fitter) created by demeler
How do I get the fitted meniscus information from a backend run into …
6:43 PM Ticket #175 (LIMS queue viewer won't delete job on bcf) reopened by dzollars
6:42 PM Ticket #175 (LIMS queue viewer won't delete job on bcf) closed by dzollars
wontfix: Bcf will soon be implemented as a gfac submission.
3:52 PM Changeset [1048] by zollarsd
Fixed another instance of deleting xml files inadvertently
3:13 PM Changeset [1047] by zollarsd
Fixed crashing intensity profile dialog
2:57 PM Changeset [1046] by gegorbet
Oops!! Had commented out latest fix for testing purposes.
2:42 PM Ticket #212 (noise-model ID linkage in DB) created by gegorbet
In tracing an apparent problem in the noise loader, I found that the …
2:15 PM Changeset [1045] by gegorbet
2dsa fixes: triple re-select brings noise dialog asking …
2:16 AM Ticket #177 (vHW - data analysis error) closed by demeler
fixed: Replying to gegorbet: > The primary reason for …
2:12 AM Ticket #211 (us_convert - "Show Intensity Profile" causes program to crash) created by demeler
I loaded demo_intensity3 from disk and assigned rotor, lab and …
2:01 AM Ticket #204 (us_fematch - pb_reset_exclude is not available) closed by demeler
fixed: It is working well - will be closed as fixed.
1:51 AM Ticket #203 (us_ga_initiliaze - resetting of solute bins is not working correctly) closed by demeler
fixed: Reviewed - works as it should now. Ticket will be closed as "fixed".
1:45 AM Ticket #202 (us_vhwenhanced - boundary percentage adjustment) closed by demeler
fixed: Reviewed - works great. Ticket will be closed.

May 23, 2011:

11:05 PM Changeset [1044] by zollarsd
Fixed issue of us_convert deleting edit profiles an other xml files
10:54 PM Changeset [1043] by gegorbet
Protect against lost buffer information with 2dsa re-select of triple.
10:01 PM Changeset [1042] by gegorbet
Auto-set boundary pos/percent (#202). Clear buckets plot correctly …
8:28 PM Changeset [1041] by zollarsd
Fixed method of calculating the last database insert ID
6:18 PM Ticket #197 (us_solutions - commonvbar is incorrectly calculated) closed by demeler
fixed: Replying to bdubbs: > OK, try revision 1033. yes, seems …
6:15 PM Ticket #210 (back-end update e-mail messages) created by demeler
The e-mail message to the user that is sent when a job completes …
1:52 PM Changeset [1040] by gegorbet
Fix vHW to use single sed.coeff. intercept in back-diffusion calc. and …
1:35 PM Ticket #209 (backend 2DSA is going way too slow) created by demeler
The supercomputer version of 2DSA runs significantly slower than the …
1:32 PM Ticket #208 (uslims - meniscus calculation is not displayed) created by demeler
I saw a fix for this earlier, but now it seems to be reverted. When …
11:42 AM Ticket #207 (uslims - noise selection not working) created by demeler
When selecting noise files from multi-triple runs the program doesn't …
11:33 AM Ticket #206 (us_convert - erases contents of data directory when loading us3 run ...) created by demeler
The title says it all - when I tried to load an US3 run from disk the …
4:38 AM Changeset [1039] by dubbs
Expand soem error messages
3:40 AM Ticket #205 (us_convert - committing to DB fails) created by demeler
Everytime I tried to commit experimental data to the DB the program …
3:24 AM Ticket #204 (us_fematch - pb_reset_exclude is not available) created by demeler
us_fematch: is not derived from us_analysisbase2, so pb_reset_exclude …
3:23 AM Ticket #203 (us_ga_initiliaze - resetting of solute bins is not working correctly) created by demeler
reset solute bins only clears the screen for the last set, not all of …
3:22 AM Ticket #202 (us_vhwenhanced - boundary percentage adjustment) created by demeler
changing the boundary percentage should center analyzed boundary so …
3:21 AM Ticket #201 (2dsa - issues when switching between triples) created by demeler
when switching between triples from a multi-triple run when loaded …

May 22, 2011:

4:48 AM Changeset [1038] by dubbs
Fix manual Makefile to not embed the path to the docs in the files.

May 20, 2011:

11:32 PM Ticket #200 (Constraints on HPCAnalysisResultData table not working) created by dzollars
Constraints on HPCAnalysisResultData table are causing problems. This …
11:13 PM Ticket #199 (stored procedure updates for editID from models and editedData) closed by gegorbet
fixed: Tests in us_noise.cpp and us_manage_data verify that these procedures …
11:03 PM Changeset [1037] by zollarsd
Updated constraints on HPCAnalysisResultData table
11:02 PM Changeset [1036] by gegorbet
Fixes to get editID correctly updated for noise loaded to DB.
10:07 PM get_editID created by dzollars
10:04 PM MySQLStoredProcedureAPI edited by dzollars
(diff)
10:01 PM get_model_desc edited by dzollars
(diff)
9:56 PM Changeset [1035] by zollarsd
Added procedures to make getting the editedDataID easier
9:40 PM Changeset [1034] by gegorbet
2dsa: min S value set to 0.2; vHW: stabilize curves with concentration …
9:30 PM Ticket #199 (stored procedure updates for editID from models and editedData) created by gegorbet
Add editID as a return from the get_model_desc() procedure. Also, add …
4:56 PM Changeset [1033] by dubbs
Properly calulate MW for DNA/RNA and return it.
5:21 AM Changeset [1032] by demeler
Updated the scan exclusion routine in all programs to consistently …
4:04 AM Changeset [1031] by dubbs
In us_analyte_gui, only update protein vbar (not mw) from the line …

May 19, 2011:

11:58 PM Ticket #196 (us_analyte - DNA entries lose MW from sequence) closed by demeler
fixed: Replying to bdubbs: > OK, try the fixes in revision 1030. …
10:48 PM Changeset [1030] by dubbs
Properly set and retrieve nucleotice information Display mw properly …
4:16 PM Changeset [1029] by gegorbet
Change magnitude limit on bucket s min from 1.0 to 0.1 .
2:39 PM Changeset [1028] by gegorbet
Limit ga_init buckets to physically possible vertex values. A few more …
1:25 PM Ticket #198 (noise loader) created by demeler
I newly committed demo1_veloc under my own username on cauma3 and …
1:11 PM Ticket #197 (us_solutions - commonvbar is incorrectly calculated) created by demeler
I made a new solution in the CAUMA3 db: DNA-Lysozyme mixture. It has …
1:09 PM Ticket #196 (us_analyte - DNA entries lose MW from sequence) created by demeler
When I enter a new DNA analyte, and then enter a sequence, it …
4:26 AM Changeset [1027] by dubbs
Start calulations at first non-execuded scan.
12:11 AM Changeset [1026] by gegorbet
Speed up noise list creation from DB. Plateau fitting and …

May 18, 2011:

3:44 PM Changeset [1025] by dubbs
W32 build updates/files

May 17, 2011:

8:12 PM Ticket #192 (Backend model analyte names) closed by dzollars
fixed
8:12 PM Ticket #193 (uslims3 - queue viewer) closed by dzollars
fixed
8:11 PM Ticket #195 (US Config should save user's GUID and password info) closed by dzollars
fixed
8:03 PM Changeset [1024] by dubbs
Zero pad component name increment
7:54 PM Ticket #178 (Meniscus fit imports) closed by dzollars
fixed
7:46 PM Ticket #182 (In vHw analysis data not saved in disk mode) closed by dzollars
fixed
7:43 PM Ticket #169 (us_globalequil - doesn't load experiments) closed by dzollars
fixed
7:43 PM Ticket #171 (us_globalequil - GUI changes) closed by dzollars
fixed
7:40 PM Ticket #190 (us_fematch - problems with scan exclusion) closed by dzollars
fixed
7:14 PM Changeset [1023] by dubbs
In the back end 2dsa master: Update meniscus udp output (Ticket …
6:35 PM Changeset [1022] by dubbs
Ensure default investigator is saved as current when saving new DB …
5:48 PM Ticket #191 (us_fematch - reset button does not work) closed by gegorbet
fixed: Bruce and Dan observed that the button - now called Reset Scans - does …
5:46 PM Ticket #189 (us_fematch - add progress bar) closed by gegorbet
fixed: Dan and Bruce observed that there is a progress bar and that it …
5:44 PM Ticket #188 (us_fematch - program crashes when switching between triples) closed by gegorbet
fixed: Reviewed by Bruce, Dan, Gary and judged resolved.
5:42 PM Ticket #194 (Project ownership is not established when saving to database) closed by dzollars
invalid: Problem will be fixed in us_config. See ticket #195.
5:14 PM Ticket #133 (Updates to back end) closed by dzollars
fixed
5:13 PM Ticket #164 (uslims3 - 2DSA submission) closed by dzollars
fixed
5:05 PM Ticket #187 (triple information missing in queue viewer) closed by dzollars
invalid
5:03 PM Ticket #165 (uslims3 - queue viewer) closed by dzollars
fixed
4:53 PM Ticket #195 (US Config should save user's GUID and password info) created by dzollars
In the case where user is establishing a new account, US_Config should …
4:35 PM Ticket #194 (Project ownership is not established when saving to database) created by dzollars
When loading a project from disk and then saving it to DB the …
4:23 PM Ticket #180 (Change default experiment type) closed by dzollars
fixed
4:22 PM Ticket #181 (us_convert crash when loading local data) closed by dzollars
fixed
4:21 PM Ticket #160 (us_convert - crashes after excluding scans) closed by dzollars
fixed
4:13 PM Ticket #183 (reports in local disk mode) closed by dzollars
fixed
4:04 PM Ticket #184 (us_config crashed when saving master password) closed by dzollars
fixed
4:25 AM Changeset [1021] by zollarsd
Added new experiment types
1:52 AM Changeset [1020] by gegorbet
Mods to method for initial plateaus determination, then refinement …

May 16, 2011:

3:27 PM BuildInstructions edited by jeremy
(diff)
3:32 AM Ticket #193 (uslims3 - queue viewer) created by demeler
Regarding the display of meniscus iterations: To plot the actual …
1:25 AM Ticket #186 (New MYSQL error when submitting velocity data to Ranger) closed by demeler
fixed: I checked out this ticket and can no longer reproduce this error after …
12:03 AM Changeset [1019] by gegorbet
Added progress bar for simulation.

May 15, 2011:

6:07 PM Ticket #192 (Backend model analyte names) created by gegorbet
I would like to see the name values of the analytes of models produced …
5:12 PM Changeset [1018] by gegorbet
Fix FeMatch? to not crash with triple change, to recalculate rmsd with …
1:20 PM Ticket #191 (us_fematch - reset button does not work) created by demeler
The reset button is not working, or it is not clear what is being …
1:17 PM Ticket #190 (us_fematch - problems with scan exclusion) created by demeler
When I exclude scans from an experiment, the scans will show up as …
12:19 PM Ticket #189 (us_fematch - add progress bar) created by demeler
Can you add a progress bar that indicates to the user how long it will …
12:16 PM Ticket #188 (us_fematch - program crashes when switching between triples) created by demeler
Looks like some arrays are not getting their memory released and …
3:42 AM Changeset [1017] by gegorbet
Minor fix for doxygen.
3:22 AM Changeset [1016] by gegorbet
Refinements to vHW's handling of noise-applied data. Add of Edit …

May 14, 2011:

6:47 PM Ticket #187 (triple information missing in queue viewer) created by demeler
Is it possible to display the active triple for each triple from the …
6:44 PM Ticket #186 (New MYSQL error when submitting velocity data to Ranger) created by demeler
I asked for 10 meniscus points, but this information does not seem to …
2:52 AM Changeset [1015] by dubbs
Ensure initial directories are always created.

May 13, 2011:

11:41 PM Changeset [1014] by dubbs
Initialize a pointer before use.
11:00 PM Changeset [1013] by gegorbet
Insure reportDir()/runID is created for analyses. Make plot left …
10:26 PM Changeset [1012] by zollarsd
Fixed us_convert program crash when loading data
9:56 PM Ticket #185 (genetic algorithm control window fixes) created by dzollars
f/f0 should never be below 1.0. Sometimes a single bucket will have a …
9:40 PM Ticket #173 (Non-unique GUID's) closed by dzollars
fixed
9:38 PM Ticket #158 (Edit users problem) closed by dzollars
fixed
9:35 PM Ticket #157 (Add code in LIMS so that the administrator can make anybody an operator) closed by dzollars
fixed
9:35 PM Ticket #156 (LIMS 3 error) closed by dzollars
fixed
9:34 PM Ticket #147 (secure passwords for lims instances) closed by dzollars
fixed
9:27 PM Ticket #184 (us_config crashed when saving master password) created by dzollars
In a limited resource environment, us_config crashed when saving the …
9:27 PM Ticket #84 (DB connectivity error when installing new GUI instance) closed by dzollars
fixed
9:23 PM Ticket #183 (reports in local disk mode) created by dzollars
Reports not written correctly when first starting to use the program …
9:19 PM Ticket #182 (In vHw analysis data not saved in disk mode) created by dzollars
When saving data in van hold weichet analysis, the data is not being …
9:11 PM Ticket #181 (us_convert crash when loading local data) created by dzollars
The program crashes when loading US3 data from disk mode.
9:05 PM Ticket #180 (Change default experiment type) created by dzollars
Add other experiment types Diffusion multi-wavelength Velocity …
8:43 PM Ticket #179 (queue viewer delete function) created by dzollars
Userlevel 4 should not be able to delete jobs submitted from other …
7:16 PM Changeset [1011] by zollarsd
Fixed maximum value on scan controls when excluding scans
6:13 PM Changeset [1010] by gegorbet
Mods to output fit-meniscus .dat files with save in 2dsa. Mods to …
1:04 PM Ticket #178 (Meniscus fit imports) created by demeler
We need a way to import the meniscus fitting results into the meniscus …
2:55 AM Ticket #177 (vHW - data analysis error) created by demeler
Loading the vHW analysis on demo1_intensity-test10 dataset on the …
2:52 AM Ticket #167 (second moment x axis labels) closed by demeler
fixed: This seems to work now. Will mark as fixed.
2:50 AM Ticket #163 (us_edit - edits not saved in DB) closed by demeler
fixed: I can confirm that this is fixed. I was able to access the edits now …
2:48 AM Ticket #168 (us_convert doesn't allow saving of data) closed by demeler
fixed: This seems to work fine - this error would no longer come up on either …
2:46 AM Ticket #176 (noise application in data analysis programs) closed by demeler
fixed: I reviewed this and it appears to work for all programs. I'll go ahead …
12:34 AM Changeset [1009] by gegorbet
Fix analyses for smoothing and so on after noise applied.
12:23 AM Changeset [1008] by gegorbet
Simplify experiment type filtering of data loads, using new DB field …

May 12, 2011:

11:48 PM Ticket #174 (Add experiment type to all_editedDataIDs API) closed by gegorbet
fixed: This change can only really be verified in code and not by a user. I …
10:45 PM Ticket #176 (noise application in data analysis programs) created by demeler
The ti/ri noise application doesn't work correctly in all of the …
10:21 PM Changeset [1007] by zollarsd
Ensure top-level directories are created before used Ensured …
10:02 PM Changeset [1006] by gegorbet
2dsa fix of hang when cumulative computed solutes count is exactly the …
5:18 PM Changeset [1005] by zollarsd
Added experiment type to all_editedDataIDs stored procedure Dropped …
4:54 PM all_editedDataIDs edited by dzollars
(diff)

May 11, 2011:

11:48 PM Changeset [1004] by gegorbet
Fix to search for plateaus far enough back from the end. Add test for …
7:29 PM Ticket #175 (LIMS queue viewer won't delete job on bcf) created by dzollars
Implement the delete button for bcf also.
7:21 PM Changeset [1003] by gegorbet
Added experiment-type filtering in data load (#169).
6:29 PM Ticket #174 (Add experiment type to all_editedDataIDs API) created by gegorbet
Add an experiment type field ("Velocity", "Equilibrium", "Other") as a …

May 10, 2011:

8:22 PM Changeset [1002] by zollarsd
Fix read/write blob to properly set db_errno. Update us_edit to …
6:22 PM Ticket #162 (us_edit - remove spikes is not working correctly) closed by demeler
fixed: I checked it now that the us_convert program is working - and the …
3:15 PM Changeset [1001] by zollarsd
Fixed issue of duplicate GUID's, releasing shared memory

May 9, 2011:

6:16 PM Changeset [1000] by dubbs
Doxygen fixes
6:09 PM Ticket #170 (us_edit gets lost when backing up with equilbrium data) closed by bdubbs
fixed: The change looks good.
5:32 PM Changeset [999] by gegorbet
Fixes for equilib edit backup (#170). Fix so arrow key can be used to …
5:07 PM Ticket #173 (Non-unique GUID's) created by dzollars
It appears that US_Util::new_guid() is giving out the same sequence of …
12:58 PM Ticket #160 (us_convert - crashes after excluding scans) reopened by demeler
11:51 AM Ticket #172 (us_globalequil - fitting routine needs work) created by demeler
When loading abs_equil from user "demeler" in the database the fitting …
11:44 AM Ticket #171 (us_globalequil - GUI changes) created by demeler
When multiple triples are listed in the listbox, clicking on …
5:26 AM Ticket #170 (us_edit gets lost when backing up with equilbrium data) created by bdubbs
If editing equilibrium data and the user wants to back up by selecting …
5:15 AM Changeset [998] by dubbs
Fix blob read/write to properly set db_errno.
5:14 AM Changeset [997] by dubbs
Add investigatorID with get_experiment_info_by_runID. Add error …
2:13 AM Ticket #169 (us_globalequil - doesn't load experiments) reopened by demeler
Replying to gegorbet: > According to us_manage_data, the …

May 8, 2011:

10:54 PM Ticket #169 (us_globalequil - doesn't load experiments) closed by gegorbet
invalid: According to us_manage_data, the demo1_equil_abs experiment has AUC …
4:41 PM Ticket #169 (us_globalequil - doesn't load experiments) created by demeler
I tried to load an equilibrium experiment in us_globalequil, but when …
2:19 AM Changeset [996] by gegorbet
Fix Max.OD/Fringe logic. Reset Scan Limits for selected scan only. …

May 7, 2011:

11:00 PM Changeset [995] by dubbs
Add icon to widget classes and main program
7:24 PM Changeset [994] by demeler
New UltraScan3 icons
7:23 PM Ticket #154 (US3 Icons) closed by demeler
fixed: Add 48x48 and 32x32 US-3 icon to ultrascan3/etc in both png and xpm format.
2:18 AM Changeset [993] by dubbs
Minor cosmetic changes

May 6, 2011:

11:59 PM Changeset [992] by dubbs
Fix memset command in us_convert. The error was introduced when …
9:00 PM Changeset [991] by zollarsd
Changed state specification in DB
8:50 PM Ticket #128 (In global Equil analysis, method of overriding excluded scans) closed by gegorbet
fixed: Defect with handling of scan diagnostics and revisiting colors is …
8:24 PM Ticket #168 (us_convert doesn't allow saving of data) created by dzollars
Using demo1_intensity data in the US3_Automated_Test database, …
8:12 PM Ticket #139 (us_convert - Experiment Information) closed by dzollars
worksforme
8:11 PM Ticket #160 (us_convert - crashes after excluding scans) closed by dzollars
fixed
8:06 PM Ticket #142 (rotor calibration) closed by dzollars
fixed
7:52 PM Ticket #151 (Sedimentation coefficients in all sed veloc analyses are off by factor > 10) closed by dzollars
fixed
7:51 PM Ticket #167 (second moment x axis labels) created by dzollars
The labels are too close together when there are a lot of points.
7:46 PM Ticket #159 (us_convert - Run Details doesn't work) closed by dzollars
fixed
7:46 PM Ticket #152 (us_analyte does not work for RNA) closed by dzollars
fixed
7:40 PM Ticket #149 (US solution buffer selection) closed by dzollars
fixed
7:39 PM Ticket #129 (deleting components in the database, disk) closed by dzollars
fixed
7:34 PM Ticket #126 (global equil analysis) closed by dzollars
fixed
7:33 PM Ticket #166 (us global equil maximum OD) created by dzollars
Implement maximum OD in us global equil. If the user enters a max OD …
7:15 PM Ticket #124 (in van holde-weichet analysis, diffusion boundary) closed by dzollars
fixed
4:51 PM Changeset [990] by zollarsd
Added code to replace and delete dummy rotor calibration when new one …
3:53 AM Changeset [989] by dubbs
Add additional error checking when writing edit data to the DB.

May 5, 2011:

9:52 PM replace_rotor_calibration edited by dzollars
(diff)
9:47 PM last_errno edited by dzollars
(diff)
9:47 PM replace_rotor_calibration created by dzollars
9:37 PM MySQLStoredProcedureAPI edited by dzollars
(diff)
8:08 PM Ticket #146 (change operators) closed by dzollars
duplicate
8:00 PM Ticket #148 (General ticket for setting up new lims application) closed by dzollars
duplicate
7:04 PM Changeset [988] by gegorbet
Fixed problem with accidental disable of slots (#159).
4:32 PM Ticket #150 (us_dataIO2 array overrun for interference data) closed by demeler
fixed: I reviewed it and it seems to work fine now. I'll close it for now.
2:22 PM Ticket #165 (uslims3 - queue viewer) created by demeler
On a run I did my analysis was queued on lonestar. There are two …
1:54 PM Ticket #164 (uslims3 - 2DSA submission) created by demeler
I did received a MYSQL syntax error when I tried to submit a job: …
1:37 PM Ticket #163 (us_edit - edits not saved in DB) created by demeler
When I load an experiment from the DB to edit it, and "Apply prior …
1:19 PM Ticket #162 (us_edit - remove spikes is not working correctly) created by demeler
Please check the spikes routine with demo1_intensity, it is not …
1:12 PM Ticket #161 (us_convert - intensity profile) created by demeler
Eventually we will need a way to store the intensity profile that was …
1:02 PM Ticket #160 (us_convert - crashes after excluding scans) created by demeler
If I try to save data in us_convert after excluding scans (say, the …
12:52 PM Ticket #159 (us_convert - Run Details doesn't work) created by demeler
I loaded the demo1_intensity from the workshop demo files into …
2:42 AM Ticket #158 (Edit users problem) created by bdubbs
edit_users.php -> new creates a null person in the DB. Editing that …
2:35 AM Ticket #157 (Add code in LIMS so that the administrator can make anybody an operator) created by demeler
The instrument operator must be set so that anyone can be the operator.
1:45 AM Ticket #156 (LIMS 3 error) created by demeler
when editing your own information the fields are incorrectly displayed …

May 4, 2011:

7:56 PM Changeset [987] by dubbs
Fix some warnings identified by the intel compiler
7:15 PM Changeset [986] by dubbs
Update debug statements in us_mpi_analysis
3:46 PM Ticket #155 (Manage analytes from solution window) created by bdubbs
We should be able to bring up the analyte gui by double clicking an …
1:05 AM Changeset [985] by gegorbet
Fix correction calculation for temperature under 20.

May 3, 2011:

9:41 PM Changeset [984] by dubbs
Another intermediate commit, but at least this one compiles.
9:35 PM Changeset [983] by dubbs
Remove an unneeded reference to a parameter
9:14 PM Changeset [982] by dubbs
Intermediate commit for common vbar. Still needs to be tested.
7:35 PM Changeset [981] by gegorbet
Fix AnalyteGui? to keep type selection, save vbar for non-Protein, …
6:45 PM Ticket #154 (US3 Icons) created by bdubbs
We need an icon for US3. The US2 icon is 44x44, but it probably …
12:58 PM Ticket #153 (2DSA does not support floating experiments) created by demeler
Floating experiments are experiments where the sedimentation direction …
2:34 AM Changeset [980] by dubbs
Fix integral calculation to properly ignore excluded scans.

May 2, 2011:

11:58 PM Changeset [979] by dubbs
remove old db directory
10:22 PM Changeset [978] by dubbs
Change encryption/decryption to directly use libcrypto. This removes …
6:54 PM Ticket #152 (us_analyte does not work for RNA) created by demeler
1. when RNA is selected, and I list descriptions in database mode, and …
6:24 PM Ticket #143 (us_rotor) closed by dzollars
fixed
6:24 PM Ticket #140 (rotor calibration) closed by dzollars
fixed
6:23 PM Ticket #137 (us_convert/Experiment information/rotor information) closed by dzollars
fixed
2:27 PM Ticket #151 (Sedimentation coefficients in all sed veloc analyses are off by factor > 10) created by demeler
I have tested vHW, dcdt and 2nd moment. All show s-values more than 10 …
2:23 PM Ticket #103 (revisit dcdt analysis) closed by demeler
fixed: The scan exclusion reset now works fine. I am going to close this …
12:54 PM Changeset [977] by gegorbet
Enable reset-excludes after excludes are applied.
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