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Ticket Resolution Summary Owner Reporter
#342 fixed us_fematch crashes with floating data gegorbet demeler
Description

If using dataset "AnnaPEschoen" from Marius Schmid (U Konstanz) and model AnnaPEschoen.2A675.e1205031240-bd_a1205031244_2DSA_0000099_i01.model I get a crash with the following debug info:

*WARNING* Unable to get rotors for lab ID "2" The simulated data does not have enough radial points and ends too early! exiting...

Program exited with code 0376.

demeler@demeler-pc1:~/ultrascan3/programs/us_fematch$ grep "The simulated data does not have enough radial points and ends too early!

I am not sure if the rotor issue is to blame here, if it is, this would likely be user-error. But: The problem is that this output is not generated in a gui fashion, only when run from the command line can this error be seen. The error occurs in us_astfem_math and is causing an exit (-1) at that point which doesn't give the GUI a chance to capture the error and display it in a meaningful way. Maybe we need to better catch errors and relay them to the user.

Secondly, we should fix the error - since this is floating data it is possible that there is an issue with the finite element simulation. I used s-values -30 - + 10 for a first try. The good news is that we now have some floating data for testing :-)

#341 fixed XML intensity file is not saved properly in us_convert dzollars demeler
Description

When loading run 182341 from the KAUST database (database ID: 50) from Lina Abdul Halim I get an error:

US3 run data ok, but unable to read intensity profile.

Improper XML in read file: /root/ultrascan/results/182341/182341.RIProfile.xml

Please check

#340 fixed us_convert crashes for unequal scan numbers dzollars demeler
Description

When trying to define reference scans for intensity data, the data crashes for the case where two cells exist (1 and 3) and cell 3 has one less scan files than cell 1 (see attached data). Attempt to define reference scan from the third triple to reproduce the crash.

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