[1] | 1 | <?php
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| 2 |
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[18] | 3 | $us3bin = exec( "ls -d ~us3/lims/bin" );
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[6] | 4 | include "$us3bin/listen-config.php";
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[25] | 5 | include "$class_dir/experiment_status.php";
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[1] | 6 |
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| 7 | write_log( "$self: Starting" );
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| 8 |
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| 9 | $handle = fopen( $pipe, "r+" );
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| 10 |
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| 11 | if ( $handle == NULL )
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| 12 | {
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| 13 | write_log( "$self: Cannot open pipe" );
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| 14 | exit( -1 );
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| 15 | }
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| 16 |
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| 17 | $msg = "";
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| 18 |
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| 19 | // From a pipe, we don't know when the message terminates, so the sender
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| 20 | // added a null to indicate the end of each message
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| 21 | do
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| 22 | {
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| 23 | $input = fgetc( $handle ); // Read one character at a time
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| 24 | $msg .= $input;
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| 25 |
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| 26 | if ( $input[ 0 ] == chr( 0 ) )
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| 27 | {
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| 28 | // Go do some work
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| 29 | $msg = rtrim( $msg );
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| 30 | if ( $msg == "Stop listen" ) break;
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| 31 | process( $msg );
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| 32 | write_log( "$self: $msg" );
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| 33 | $msg = "";
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| 34 | }
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| 35 | } while ( true );
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| 36 |
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| 37 | write_log( "$self: Stopping" );
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| 38 | exit();
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| 39 |
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| 40 | // The format of the messages would be
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| 41 | // db-requestID: message ( colon-space )
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| 42 | function process( $msg )
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| 43 | {
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| 44 | global $dbhost;
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| 45 | global $user;
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| 46 | global $passwd;
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[3] | 47 | global $self;
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[1] | 48 |
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| 49 | $list = explode( ": ", $msg );
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| 50 | list( $db, $requestID ) = explode( "-", array_shift( $list ) );
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| 51 | $message = implode( ": ", $list );
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| 52 |
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| 53 | // Convert to integer
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| 54 | settype( $requestID, 'integer' );
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| 55 |
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| 56 | // We need the gfacID
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[35] | 57 | $resource = mysqli_connect( $dbhost, $user, $passwd, $db );
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[1] | 58 |
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| 59 | if ( ! $resource )
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| 60 | {
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[35] | 61 | write_log( "$self process(): Could not connect to MySQL - " . mysqli_error($resource) );
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[1] | 62 | write_log( "$self process(): original msg - $msg" );
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| 63 | return;
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| 64 | }
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| 65 |
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| 66 | $query = "SELECT gfacID FROM HPCAnalysisResult " .
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| 67 | "WHERE HPCAnalysisRequestID=$requestID " .
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| 68 | "ORDER BY HPCAnalysisResultID DESC " .
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| 69 | "LIMIT 1";
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| 70 |
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[35] | 71 | $result = mysqli_query( $resource, $query );
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[1] | 72 |
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| 73 | if ( ! $result )
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| 74 | {
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| 75 | write_log( "$self process(): Bad query: $query" );
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| 76 | write_log( "$self process(): original msg - $msg" );
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| 77 | return;
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| 78 | }
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| 79 |
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[6] | 80 | // Set flags for Airavata/Thrift and "Finished..."
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[35] | 81 | list( $gfacID ) = mysqli_fetch_row( $result );
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| 82 | mysqli_close( $resource );
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[1] | 83 |
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[10] | 84 | $is_athrift = preg_match( "/^US3-A/i", $gfacID );
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[6] | 85 | $is_finished = preg_match( "/^Finished/i", $message );
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[1] | 86 |
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[6] | 87 | if ( $is_athrift )
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| 88 | { // Process submitted thru Airavata/Thrift
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| 89 | if ( $is_finished )
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| 90 | { // Message is "Finished..." : Update message and status
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| 91 | write_log( "$self process(): Thrift + Finished" );
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| 92 | update_db( $db, $requestID, 'finished', $message );
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| 93 | update_aira( $gfacID, $message ); // wait for Airvata to deposit data
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| 94 | }
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| 95 | else
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| 96 | { // Other messages : just update message
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| 97 | //write_log( "$self process(): Thrift, NOT Finished" );
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| 98 | $updmsg = 'update';
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| 99 | if ( preg_match( "/^Starting/i", $message ) )
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| 100 | $updmsg = 'starting';
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| 101 | if ( preg_match( "/^Abort/i", $message ) )
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| 102 | $updmsg = 'aborted';
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| 103 |
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| 104 | update_db( $db, $requestID, $updmsg, $message );
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| 105 | update_gfac( $gfacID, "UPDATING", $message );
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| 106 | }
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[1] | 107 | }
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| 108 |
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[6] | 109 | else
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| 110 | { // Not Airavata/Thrift
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| 111 | if ( $is_finished )
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| 112 | { // Handle "Finished..." message
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| 113 | $hex = "[0-9a-fA-F]";
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[1] | 114 |
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[6] | 115 | if ( preg_match( "/^US3-Experiment/i", $gfacID ) ||
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| 116 | preg_match( "/^US3-$hex{8}-$hex{4}-$hex{4}-$hex{4}-$hex{12}$/", $gfacID ) )
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| 117 | {
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| 118 | // Then it's a GFAC job
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| 119 | update_db( $db, $requestID, 'finished', $message );
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| 120 | update_gfac( $gfacID, "UPDATING", $message ); // wait for GFAC to deposit data
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| 121 | notify_gfac_done( $gfacID ); // notify them to go get it
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| 122 | }
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| 123 |
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| 124 | else
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| 125 | {
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| 126 | // It's a local job
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| 127 | update_db( $db, $requestID, 'finished', $message );
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| 128 | update_gfac( $gfacID, "COMPLETE", $message ); // data should be there already
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| 129 | }
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| 130 | }
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| 131 |
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| 132 | else if ( preg_match( "/^Starting/i", $message ) )
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[1] | 133 | {
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[6] | 134 | update_db( $db, $requestID, 'starting', $message );
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| 135 | update_gfac( $gfacID, "RUNNING", $message );
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[1] | 136 | }
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| 137 |
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[6] | 138 | else if ( preg_match( "/^Abort/i", $message ) )
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| 139 | {
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| 140 | update_db( $db, $requestID, 'aborted', $message );
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| 141 | update_gfac( $gfacID, "CANCELED", $message );
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| 142 | }
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| 143 |
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[1] | 144 | else
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| 145 | {
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[6] | 146 | update_db( $db, $requestID, 'update', $message );
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| 147 | update_gfac( $gfacID, "UPDATING", $message );
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[1] | 148 | }
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| 149 | }
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| 150 | }
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| 151 |
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| 152 | function update_db( $db, $requestID, $action, $message )
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| 153 | {
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| 154 | global $dbhost;
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| 155 | global $user;
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| 156 | global $passwd;
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| 157 | global $self;
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| 158 |
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[35] | 159 | $resource = mysqli_connect( $dbhost, $user, $passwd, $db );
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[1] | 160 |
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| 161 | if ( ! $resource )
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| 162 | {
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[35] | 163 | write_log( "$self: Could not connect to DB $db " . mysqli_error( $resource ) );
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[1] | 164 | return;
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| 165 | }
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| 166 |
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| 167 | $query = "SELECT HPCAnalysisResultID FROM HPCAnalysisResult " .
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| 168 | "WHERE HPCAnalysisRequestID=$requestID " .
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| 169 | "ORDER BY HPCAnalysisResultID DESC " .
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| 170 | "LIMIT 1";
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| 171 |
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[35] | 172 | $result = mysqli_query( $resource, $query );
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[1] | 173 |
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| 174 | if ( ! $result )
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| 175 | {
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| 176 | write_log( "$self: Bad query: $query" );
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| 177 | return;
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| 178 | }
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| 179 |
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[35] | 180 | list( $resultID ) = mysqli_fetch_row( $result );
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[1] | 181 |
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| 182 | $query = "UPDATE HPCAnalysisResult SET ";
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| 183 |
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| 184 | switch ( $action )
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| 185 | {
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| 186 | case "starting":
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| 187 | $query .= "queueStatus='running'," .
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| 188 | "startTime=now(), ";
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| 189 | break;
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| 190 |
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| 191 | case "aborted":
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| 192 | $query .= "queueStatus='aborted'," .
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| 193 | "endTime=now(), ";
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| 194 | break;
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| 195 |
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| 196 | case "finished":
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| 197 | $query .= "queueStatus='completed'," .
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| 198 | "endTime=now(), ";
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[6] | 199 | //write_log( "$self process(): $requestID : dbupd : Finished" );
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[1] | 200 | break;
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| 201 |
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[6] | 202 | case "update":
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| 203 | //write_log( "$self process(): $requestID : dbupd : update" );
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[1] | 204 | default:
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| 205 | break;
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| 206 | }
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| 207 |
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[35] | 208 | $query .= "lastMessage='" . mysqli_real_escape_string( $resource, $message ) . "'" .
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[1] | 209 | "WHERE HPCAnalysisResultID=$resultID";
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| 210 |
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[35] | 211 | mysqli_query( $resource, $query );
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| 212 | mysqli_close( $resource );
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[1] | 213 | }
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| 214 |
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| 215 | // Function to update the global database status
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| 216 | function update_gfac( $gfacID, $status, $message )
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| 217 | {
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| 218 | global $dbhost;
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| 219 | global $guser;
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| 220 | global $gpasswd;
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| 221 | global $gDB;
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| 222 | global $self;
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| 223 |
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| 224 | $allowed_status = array( 'RUNNING',
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| 225 | 'UPDATING',
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| 226 | 'CANCELED',
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| 227 | 'COMPLETE'
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| 228 | );
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| 229 |
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| 230 | // Get data from global GFAC DB
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[35] | 231 | $gLink = mysqli_connect( $dbhost, $guser, $gpasswd, $gDB );
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| 232 | if ( ! $gLink )
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[1] | 233 | {
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[35] | 234 | write_log( "$self: Could not select DB $gDB " . mysqli_error( $gLink ) );
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[1] | 235 | return;
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| 236 | }
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| 237 |
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| 238 | $status = strtoupper( $status );
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| 239 | if ( ! in_array( $status, $allowed_status ) )
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| 240 | {
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| 241 | write_log( "$self: update_gfac status $status not allowed" );
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| 242 | return;
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| 243 | }
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| 244 |
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| 245 | // if 'UPDATING' then we're only updating the queue_messages table
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[6] | 246 | if ( $status == 'UPDATING' )
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[1] | 247 | {
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[6] | 248 | $query = "UPDATE analysis " .
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[35] | 249 | "SET queue_msg='" . mysqli_real_escape_string( $gLink, $message ) . "' " .
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[1] | 250 | "WHERE gfacID='$gfacID'";
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| 251 |
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[6] | 252 | //write_log( "$self process(): updgf-u : status=$status" );
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[35] | 253 | mysqli_query( $gLink, $query );
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[1] | 254 | }
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| 255 |
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[6] | 256 | else
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| 257 | {
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| 258 | $query = "UPDATE analysis SET status='$status', " .
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[35] | 259 | "queue_msg='" . mysqli_real_escape_string( $gLink, $message ) . "' " .
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[6] | 260 | "WHERE gfacID='$gfacID'";
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| 261 |
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| 262 | //write_log( "$self process(): updgf-s : status=$status" );
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[35] | 263 | mysqli_query( $gLink, $query );
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[6] | 264 | }
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| 265 |
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[1] | 266 | // Also update the queue_messages table
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| 267 | $query = "SELECT id FROM analysis " .
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| 268 | "WHERE gfacID = '$gfacID'";
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[35] | 269 | $result = mysqli_query( $gLink, $query );
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[1] | 270 | if ( ! $result )
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| 271 | {
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[35] | 272 | write_log( "$self: bad query: $query " . mysqli_error( $gLink ) );
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[1] | 273 | return;
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| 274 | }
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| 275 |
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[35] | 276 | if ( mysqli_num_rows( $result ) == 0 )
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[1] | 277 | {
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| 278 | write_log( "$self: can't find $gfacID in GFAC db" );
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| 279 | return;
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| 280 | }
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| 281 |
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[35] | 282 | list( $aID ) = mysqli_fetch_array( $result );
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[1] | 283 |
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| 284 | $query = "INSERT INTO queue_messages " .
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| 285 | "SET analysisID = $aID, " .
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[35] | 286 | "message = '" . mysqli_real_escape_string( $gLink, $message ) . "'";
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| 287 | $result = mysqli_query( $gLink, $query );
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[1] | 288 | if ( ! $result )
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| 289 | {
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[35] | 290 | write_log( "$self: bad query: $query " . mysqli_error( $gLink ) );
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[1] | 291 | return;
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| 292 | }
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| 293 |
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[35] | 294 | mysqli_close( $gLink );
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[1] | 295 | }
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| 296 |
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| 297 | // function to notify GFAC that the UDP message "Finished" has arrived
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| 298 | function notify_gfac_done( $gfacID )
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| 299 | {
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| 300 | global $serviceURL;
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[6] | 301 | global $self;
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[1] | 302 |
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| 303 | $hex = "[0-9a-fA-F]";
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| 304 | if ( ! preg_match( "/^US3-Experiment/i", $gfacID ) &&
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| 305 | ! preg_match( "/^US3-$hex{8}-$hex{4}-$hex{4}-$hex{4}-$hex{12}$/", $gfacID ) )
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| 306 | {
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| 307 | // Then it's not a GFAC job
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| 308 | return false;
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| 309 | }
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| 310 |
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| 311 | $url = "$serviceURL/setstatus/$gfacID";
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| 312 | try
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| 313 | {
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| 314 | $post = new HttpRequest( $url, HttpRequest::METH_GET );
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| 315 | $http = $post->send();
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| 316 | $xml = $post->getResponseBody();
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| 317 | }
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| 318 | catch ( HttpException $e )
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| 319 | {
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| 320 | write_log( "$self: Set status unsuccessful - $gfacID" );
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| 321 | return false;
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| 322 | }
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| 323 |
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| 324 | // Parse the result
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| 325 | // Not sure we need to know $gfac_status = parse_response( $xml );
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| 326 |
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| 327 | // return $gfac_status;
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| 328 |
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| 329 | return true;
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| 330 | }
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[6] | 331 |
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| 332 | // Function to update the global database status (AThrift + Finished)
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| 333 | function update_aira( $gfacID, $message )
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| 334 | {
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| 335 | global $dbhost;
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| 336 | global $guser;
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| 337 | global $gpasswd;
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| 338 | global $gDB;
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| 339 | global $self;
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| 340 |
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| 341 | // Get data from global GFAC DB
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[35] | 342 | $gLink = mysqli_connect( $dbhost, $guser, $gpasswd, $gDB );
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| 343 | if ( ! $gLink )
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[6] | 344 | {
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[35] | 345 | write_log( "$self: Could not connect to DB $gDB " . mysqli_error( $gLink ) );
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[6] | 346 | return;
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| 347 | }
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| 348 |
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| 349 | // Update message and update status to 'FINISHED'
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| 350 | $query = "UPDATE analysis SET status='FINISHED', " .
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[35] | 351 | "queue_msg='" . mysqli_real_escape_string( $gLink, $message ) . "' " .
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[6] | 352 | "WHERE gfacID='$gfacID'";
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| 353 |
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[35] | 354 | mysqli_query( $gLink, $query );
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[6] | 355 | write_log( "$self: Status FINISHED and 'Finished...' message updated" );
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| 356 |
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| 357 | // Also update the queue_messages table
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| 358 | $query = "SELECT id FROM analysis " .
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| 359 | "WHERE gfacID = '$gfacID'";
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[35] | 360 | $result = mysqli_query( $gLink, $query );
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[6] | 361 | if ( ! $result )
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| 362 | {
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[35] | 363 | write_log( "$self: bad query: $query " . mysqli_error( $gLink ) );
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[6] | 364 | return;
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| 365 | }
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| 366 |
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[35] | 367 | if ( mysqli_num_rows( $result ) == 0 )
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[6] | 368 | {
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| 369 | // write_log( "$self: can't find $gfacID in GFAC db" );
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| 370 | return;
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| 371 | }
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| 372 |
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[35] | 373 | list( $aID ) = mysqli_fetch_array( $result );
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[6] | 374 |
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| 375 | $query = "INSERT INTO queue_messages " .
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| 376 | "SET analysisID = $aID, " .
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[35] | 377 | "message = '" . mysqli_real_escape_string( $gLink, $message ) . "'";
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| 378 | $result = mysqli_query( $gLink, $query );
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[6] | 379 | if ( ! $result )
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| 380 | {
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[35] | 381 | write_log( "$self: bad query: $query " . mysqli_error( $gLink ) );
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[6] | 382 | return;
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| 383 | }
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| 384 |
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[35] | 385 | mysqli_close( $gLink );
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[6] | 386 | }
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[1] | 387 | ?>
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