1 | <?php
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2 |
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3 | // Global variables
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4 | $gfac_message = "";
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5 | $updateTime = 0;
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6 | $submittime = 0;
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7 | $cluster = '';
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8 |
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9 | //global $self;
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10 | global $status_ex, $status_gw;
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11 |
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12 | // Produce some output temporarily, so cron will send me message
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13 | $now = time();
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14 | echo "Time started: " . date( 'Y-m-d H:i:s', $now ) . "\n";
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15 |
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16 | // Get data from global GFAC DB
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17 | $gLink = mysql_connect( $dbhost, $guser, $gpasswd );
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18 |
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19 | if ( ! mysql_select_db( $gDB, $gLink ) )
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20 | {
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21 | write_log( "$self: Could not select DB $gDB - " . mysql_error() );
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22 | mail_to_admin( "fail", "Internal Error: Could not select DB $gDB" );
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23 | exit();
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24 | }
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25 |
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26 | $query = "SELECT gfacID, us3_db, cluster, status, queue_msg, " .
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27 | "UNIX_TIMESTAMP(time), time from analysis";
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28 | $result = mysql_query( $query, $gLink );
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29 |
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30 | if ( ! $result )
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31 | {
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32 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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33 | mail_to_admin( "fail", "Query failed $query\n" . mysql_error( $gLink ) );
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34 | exit();
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35 | }
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36 |
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37 | if ( mysql_num_rows( $result ) == 0 )
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38 | {
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39 | //write_log( "$self: analysis read got numrows==0" );
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40 | exit(); // Nothing to do
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41 | }
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42 |
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43 | $me_devel = preg_match( "/class_devel/", $class_dir );
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44 |
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45 | while ( list( $gfacID, $us3_db, $cluster, $status, $queue_msg, $time, $updateTime )
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46 | = mysql_fetch_array( $result ) )
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47 | {
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48 | // If this entry does not match class/class_devel, skip processing
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49 |
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50 | if ( preg_match( "/US3-A/i", $gfacID ) )
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51 | { // For thrift, job and gridctl must match
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52 | $job_devel = preg_match( "/US3-ADEV/i", $gfacID );
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53 | if ( ( $me_devel && !$job_devel ) ||
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54 | ( !$me_devel && $job_devel ) )
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55 | { // If job not from appropriate Airavata server, skip processing
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56 | continue;
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57 | }
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58 | }
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59 | else if ( $me_devel )
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60 | { // For non-thrift and development, skip
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61 | continue;
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62 | }
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63 |
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64 | // Checking we need to do for each entry
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65 | echo "us3db=$us3_db gfid=$gfacID\n";
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66 | switch ( $us3_db )
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67 | {
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68 | case 'Xuslims3_cauma3' :
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69 | case 'Xuslims3_cauma3d' :
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70 | case 'Xuslims3_HHU' :
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71 | case 'Xuslims3_Uni_KN' :
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72 | $serviceURL = "http://gridfarm005.ucs.indiana.edu:9090/ogce-rest/job";
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73 | break;
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74 |
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75 | default :
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76 | // $serviceURL = "http://gridfarm005.ucs.indiana.edu:8080/ogce-rest/job";
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77 | break;
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78 | }
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79 |
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80 | $awork = array();
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81 | $awork = explode( "-", $gfacID );
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82 | $gfacLabl = $awork[0] . "-" . $awork[1] . "-" . $awork[2];
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83 | $loghdr = $self . ":" . $gfacLabl . "...:";
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84 | $status_in = $status;
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85 | $status_gw = $status;
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86 | $status_ex = $status;
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87 |
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88 | // If entry is for Airvata/Thrift, get the true current status
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89 |
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90 | if ( is_aira_job( $gfacID ) )
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91 | {
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92 | $status_in = $status;
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93 | $status = aira_status( $gfacID, $status_in );
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94 | if($status != $status_in )
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95 | write_log( "$loghdr Set to $status from $status_in" );
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96 | }
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97 | else
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98 | {
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99 | $status_gw = $status;
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100 | $status = get_gfac_status( $gfacID );
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101 | //if ( $status == 'FINISHED' )
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102 | if ( $status_gw == 'COMPLETE' )
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103 | $status = $status_gw;
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104 | write_log( "$loghdr non-AThrift status=$status status_gw=$status_gw" );
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105 | }
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106 |
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107 | // Sometimes during testing, the us3_db entry is not set
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108 | // If $status == 'ERROR' then the condition has been processed before
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109 | if ( strlen( $us3_db ) == 0 && $status != 'ERROR' )
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110 | {
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111 | write_log( "$loghdr GFAC DB is NULL - $gfacID" );
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112 | mail_to_admin( "fail", "GFAC DB is NULL\n$gfacID" );
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113 |
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114 | $query2 = "UPDATE analysis SET status='ERROR' WHERE gfacID='$gfacID'";
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115 | $result2 = mysql_query( $query2, $gLink );
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116 | $status = 'ERROR';
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117 |
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118 | if ( ! $result2 )
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119 | write_log( "$loghdr Query failed $query2 - " . mysql_error( $gLink ) );
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120 |
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121 | }
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122 |
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123 | //echo " st=$status\n";
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124 | switch ( $status )
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125 | {
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126 | // Already been handled
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127 | // Later update this condition to search for gfacID?
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128 | case "ERROR":
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129 | cleanup();
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130 | break;
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131 |
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132 | case "SUBMITTED":
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133 | submitted( $time );
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134 | break;
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135 |
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136 | case "SUBMIT_TIMEOUT":
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137 | submit_timeout( $time );
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138 | break;
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139 |
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140 | case "RUNNING":
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141 | case "STARTED":
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142 | case "STAGING":
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143 | case "ACTIVE":
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144 | running( $time );
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145 | break;
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146 |
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147 | case "RUN_TIMEOUT":
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148 | run_timeout($time );
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149 | break;
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150 |
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151 | case "DATA":
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152 | case "RESULTS_GEN":
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153 | wait_data( $time );
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154 | break;
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155 |
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156 | case "DATA_TIMEOUT":
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157 | data_timeout( $time );
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158 | break;
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159 |
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160 | case "COMPLETED":
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161 | case "COMPLETE":
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162 | complete();
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163 | break;
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164 |
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165 | case "CANCELLED":
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166 | case "CANCELED":
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167 | case "FAILED":
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168 | failed();
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169 | break;
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170 |
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171 | case "FINISHED":
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172 | case "DONE":
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173 | if ( is_aira_job( $gfacID ) )
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174 | {
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175 | $status_ex = getExperimentStatus( $gfacID );
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176 | write_log( "$loghdr status=$status status_ex=$status_ex" );
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177 | if ( $status_ex === 'COMPLETED' )
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178 | complete();
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179 | }
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180 | case "PROCESSING":
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181 | default:
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182 | break;
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183 | }
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184 | }
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185 |
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186 | exit();
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187 |
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188 | function submitted( $updatetime )
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189 | {
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190 | global $self;
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191 | global $gLink;
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192 | global $gfacID;
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193 | global $loghdr;
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194 |
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195 | $now = time();
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196 |
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197 | if ( $updatetime + 600 > $now ) return; // < 10 minutes ago
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198 |
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199 | if ( $updatetime + 86400 > $now ) // Within the first 24 hours
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200 | {
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201 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
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202 | $job_status = get_local_status( $gfacID );
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203 |
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204 | if ( $job_status == 'GFAC_STATUS_UNAVAILABLE' )
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205 | return;
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206 |
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207 | if ( ! in_array( $job_status, array( 'SUBMITTED', 'INITIALIZED', 'PENDING' ) ) )
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208 | {
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209 | //write_log( "$loghdr submitted:job_status=$job_status" );
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210 | update_job_status( $job_status, $gfacID );
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211 | }
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212 |
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213 | return;
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214 | }
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215 |
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216 | $message = "Job listed submitted longer than 24 hours";
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217 | write_log( "$self: $message - id: $gfacID" );
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218 | mail_to_admin( "hang", "$message - id: $gfacID" );
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219 | $query = "UPDATE analysis SET status='SUBMIT_TIMEOUT' WHERE gfacID='$gfacID'";
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220 | $result = mysql_query( $query, $gLink );
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221 |
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222 | if ( ! $result )
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223 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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224 |
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225 | update_queue_messages( $message );
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226 | update_db( $message );
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227 | }
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228 |
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229 | function submit_timeout( $updatetime )
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230 | {
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231 | global $self;
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232 | global $gLink;
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233 | global $gfacID;
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234 | global $loghdr;
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235 |
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236 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
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237 | $job_status = get_local_status( $gfacID );
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238 |
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239 | if ( $job_status == 'GFAC_STATUS_UNAVAILABLE' )
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240 | return;
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241 |
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242 | if ( ! in_array( $job_status, array( 'SUBMITTED', 'INITIALIZED', 'PENDING' ) ) )
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243 | {
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244 | //write_log( "$loghdr submit_timeout:job_status=$job_status" );
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245 | update_job_status( $job_status, $gfacID );
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246 | return;
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247 | }
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248 |
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249 | $now = time();
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250 |
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251 | if ( $updatetime + 86400 > $now ) return; // < 24 hours ago ( 48 total submitted )
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252 |
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253 | $message = "Job listed submitted longer than 48 hours";
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254 | write_log( "$self: $message - id: $gfacID" );
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255 | mail_to_admin( "hang", "$message - id: $gfacID" );
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256 | $query = "UPDATE analysis SET status='FAILED' WHERE gfacID='$gfacID'";
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257 | $result = mysql_query( $query, $gLink );
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258 |
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259 | if ( ! $result )
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260 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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261 |
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262 | update_queue_messages( $message );
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263 | update_db( $message );
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264 | }
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265 |
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266 | function running( $updatetime )
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267 | {
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268 | global $self;
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269 | global $gLink;
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270 | global $gfacID;
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271 | global $loghdr;
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272 |
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273 | $now = time();
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274 |
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275 | get_us3_data();
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276 |
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277 | if ( $updatetime + 600 > $now ) return; // message received < 10 minutes ago
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278 |
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279 | if ( $updatetime + 86400 > $now ) // Within the first 24 hours
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280 | {
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281 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
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282 | $job_status = get_local_status( $gfacID );
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283 |
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284 | if ( $job_status == 'GFAC_STATUS_UNAVAILABLE' )
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285 | return;
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286 |
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287 | if ( ! in_array( $job_status, array( 'ACTIVE', 'RUNNING', 'STARTED' ) ) )
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288 | {
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289 | //write_log( "$loghdr running:job_status=$job_status" );
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290 | update_job_status( $job_status, $gfacID );
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291 | }
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292 |
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293 | return;
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294 | }
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295 |
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296 | $message = "Job listed running longer than 24 hours";
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297 | write_log( "$self: $message - id: $gfacID" );
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298 | mail_to_admin( "hang", "$message - id: $gfacID" );
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299 | $query = "UPDATE analysis SET status='RUN_TIMEOUT' WHERE gfacID='$gfacID'";
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300 | $result = mysql_query( $query, $gLink );
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301 |
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302 | if ( ! $result )
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303 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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304 |
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305 | update_queue_messages( $message );
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306 | update_db( $message );
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307 | }
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308 |
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309 | function run_timeout( $updatetime )
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310 | {
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311 | global $self;
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312 | global $gLink;
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313 | global $gfacID;
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314 | global $loghdr;
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315 |
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316 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
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317 | $job_status = get_local_status( $gfacID );
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318 |
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319 | if ( $job_status == 'GFAC_STATUS_UNAVAILABLE' )
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320 | return;
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321 |
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322 | if ( ! in_array( $job_status, array( 'ACTIVE', 'RUNNING', 'STARTED' ) ) )
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323 | {
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324 | //write_log( "$loghdr run_timeout:job_status=$job_status" );
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325 | update_job_status( $job_status, $gfacID );
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326 | return;
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327 | }
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328 |
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329 | $now = time();
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330 |
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331 | get_us3_data();
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332 |
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333 | if ( $updatetime + 172800 > $now ) return; // < 48 hours ago
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334 |
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335 | $message = "Job listed running longer than 48 hours";
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336 | write_log( "$self: $message - id: $gfacID" );
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337 | mail_to_admin( "hang", "$message - id: $gfacID" );
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338 | $query = "UPDATE analysis SET status='FAILED' WHERE gfacID='$gfacID'";
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339 | $result = mysql_query( $query, $gLink );
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340 |
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341 | if ( ! $result )
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342 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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343 |
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344 | update_queue_messages( $message );
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345 | update_db( $message );
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346 | }
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347 |
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348 | function wait_data( $updatetime )
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349 | {
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350 | global $self;
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351 | global $gLink;
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352 | global $gfacID;
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353 | global $loghdr;
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354 |
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355 | $now = time();
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356 |
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357 | if ( $updatetime + 3600 > $now ) // < Within the first hour
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358 | {
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359 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
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360 | $job_status = get_local_status( $gfacID );
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361 |
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362 | if ( $job_status == 'GFAC_STATUS_UNAVAILABLE' )
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363 | return;
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364 |
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365 | if ( $job_status != 'DATA' )
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366 | {
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367 | //write_log( "$loghdr wait_data:job_status=$job_status" );
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368 | update_job_status( $job_status, $gfacID );
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369 | return;
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370 | }
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371 |
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372 | // Request to resend data, but only request every 5 minutes
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373 | $minute = date( 'i' ) * 1; // Makes it an int
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374 | if ( $minute % 5 ) return;
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375 |
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376 | $output_status = get_gfac_outputs( $gfacID );
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377 |
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378 | if ( $output_status !== false )
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379 | mail_to_admin( "debug", "wait_data/$gfacID/$output_status" );
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380 |
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381 | return;
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382 | }
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383 |
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384 | $message = "Waiting for data longer than 1 hour";
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385 | write_log( "$self: $message - id: $gfacID" );
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386 | mail_to_admin( "hang", "$message - id: $gfacID" );
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387 | $query = "UPDATE analysis SET status='DATA_TIMEOUT' WHERE gfacID='$gfacID'";
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388 | $result = mysql_query( $query, $gLink );
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389 |
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390 | if ( ! $result )
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391 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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392 |
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393 | update_queue_messages( $message );
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394 | update_db( $message );
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395 | }
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396 |
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397 | function data_timeout( $updatetime )
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398 | {
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399 | global $self;
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400 | global $gLink;
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401 | global $gfacID;
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402 | global $loghdr;
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403 |
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404 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
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405 | $job_status = get_local_status( $gfacID );
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406 |
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407 | if ( $job_status == 'GFAC_STATUS_UNAVAILABLE' )
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408 | return;
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409 |
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410 | if ( $job_status != 'DATA' )
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411 | {
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412 | //write_log( "$loghdr data_timeout:job_status=$job_status" );
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413 | update_job_status( $job_status, $gfacID );
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414 | return;
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415 | }
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416 |
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417 | $now = time();
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418 |
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419 | if ( $updatetime + 86400 > $now ) // < 24 hours ago
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420 | {
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421 | // Request to resend data, but only request every 15 minutes
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422 | $minute = date( 'i' ) * 1; // Makes it an int
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423 | if ( $minute % 15 ) return;
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424 |
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425 | $output_status = get_gfac_outputs( $gfacID );
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426 |
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427 | if ( $output_status !== false )
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428 | mail_to_admin( "debug", "data_timeout/$gfacID/$output_status" );
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429 |
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430 | return;
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431 | }
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432 |
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433 | $message = "Waiting for data longer than 24 hours";
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434 | write_log( "$self: $message - id: $gfacID" );
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435 | mail_to_admin( "hang", "$message - id: $gfacID" );
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436 | $query = "UPDATE analysis SET status='FAILED' WHERE gfacID='$gfacID'";
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437 | $result = mysql_query( $query, $gLink );
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438 |
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439 | if ( ! $result )
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440 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
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441 |
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442 | update_queue_messages( $message );
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443 | update_db( $message );
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444 | }
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445 |
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446 | function complete()
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447 | {
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448 | // Just cleanup
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449 | cleanup();
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450 | }
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451 |
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452 | function failed()
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453 | {
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454 | // Just cleanup
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455 | cleanup();
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456 | }
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457 |
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458 | function cleanup()
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459 | {
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460 | global $self;
|
---|
461 | global $gLink;
|
---|
462 | global $gfacID;
|
---|
463 | global $us3_db;
|
---|
464 | global $loghdr;
|
---|
465 | global $class_dir;
|
---|
466 |
|
---|
467 | // Double check that the gfacID exists
|
---|
468 | $query = "SELECT count(*) FROM analysis WHERE gfacID='$gfacID'";
|
---|
469 | $result = mysql_query( $query, $gLink );
|
---|
470 |
|
---|
471 | if ( ! $result )
|
---|
472 | {
|
---|
473 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
|
---|
474 | mail_to_admin( "fail", "Query failed $query\n" . mysql_error( $gLink ) );
|
---|
475 | return;
|
---|
476 | }
|
---|
477 |
|
---|
478 | list( $count ) = mysql_fetch_array( $result );
|
---|
479 |
|
---|
480 | if ($count==0)
|
---|
481 | write_log( "$loghdr count = $count gfacID = $gfacID" );
|
---|
482 | if ( $count == 0 ) return;
|
---|
483 |
|
---|
484 | // Now check the us3 instance
|
---|
485 | $requestID = get_us3_data();
|
---|
486 | //write_log( "$loghdr requestID = $requestID gfacID = $gfacID" );
|
---|
487 | if ( $requestID == 0 ) return;
|
---|
488 |
|
---|
489 | $me_devel = preg_match( "/class_devel/", $class_dir );
|
---|
490 |
|
---|
491 | if ( preg_match( "/US3-A/i", $gfacID ) )
|
---|
492 | {
|
---|
493 | $job_devel = preg_match( "/US3-ADEV/i", $gfacID );
|
---|
494 | if ( ( !$me_devel && !$job_devel ) ||
|
---|
495 | ( $me_devel && $job_devel ) )
|
---|
496 | { // If job from appropriate Airavata server, process it
|
---|
497 | //write_log( "$loghdr CALLING aira_cleanup()" );
|
---|
498 | aira_cleanup( $us3_db, $requestID, $gLink );
|
---|
499 | }
|
---|
500 | //write_log( "$loghdr RTN FR aira_cleanup()" );
|
---|
501 | }
|
---|
502 |
|
---|
503 | else if ( ! $me_devel )
|
---|
504 | { // If this is gridctl_pro and gfac (jureca), do GFAC cleanup
|
---|
505 | //write_log( "$loghdr CALLING gfac_cleanup()" );
|
---|
506 | gfac_cleanup( $us3_db, $requestID, $gLink );
|
---|
507 | }
|
---|
508 | }
|
---|
509 |
|
---|
510 | // Function to update status of job
|
---|
511 | function update_job_status( $job_status, $gfacID )
|
---|
512 | {
|
---|
513 | global $gLink;
|
---|
514 | global $query;
|
---|
515 | global $self;
|
---|
516 | global $loghdr;
|
---|
517 |
|
---|
518 | switch ( $job_status )
|
---|
519 | {
|
---|
520 | case 'SUBMITTED' :
|
---|
521 | case 'SUBMITED' :
|
---|
522 | case 'INITIALIZED' :
|
---|
523 | $query = "UPDATE analysis SET status='SUBMITTED' WHERE gfacID='$gfacID'";
|
---|
524 | $message = "Job status request reports job is " . $job_status;
|
---|
525 | //write_log( "$loghdr update_job_status(SUBM) job_status=$job_status" );
|
---|
526 | break;
|
---|
527 |
|
---|
528 | case 'STARTED' :
|
---|
529 | case 'RUNNING' :
|
---|
530 | case 'ACTIVE' :
|
---|
531 | $query = "UPDATE analysis SET status='RUNNING' WHERE gfacID='$gfacID'";
|
---|
532 | $message = "Job status request reports job is RUNNING";
|
---|
533 | break;
|
---|
534 |
|
---|
535 | case 'FINISHED' :
|
---|
536 | $query = "UPDATE analysis SET status='FINISHED' WHERE gfacID='$gfacID'";
|
---|
537 | $message = "NONE";
|
---|
538 | break;
|
---|
539 |
|
---|
540 | case 'DONE' :
|
---|
541 | $query = "UPDATE analysis SET status='DONE' WHERE gfacID='$gfacID'";
|
---|
542 | $message = "NONE";
|
---|
543 | break;
|
---|
544 |
|
---|
545 | case 'COMPLETED' :
|
---|
546 | case 'COMPLETE' :
|
---|
547 | $query = "UPDATE analysis SET status='COMPLETE' WHERE gfacID='$gfacID'";
|
---|
548 | $message = "Job status request reports job is COMPLETED";
|
---|
549 | break;
|
---|
550 |
|
---|
551 | case 'DATA' :
|
---|
552 | $query = "UPDATE analysis SET status='DATA' WHERE gfacID='$gfacID'";
|
---|
553 | $message = "Job status request reports job is COMPLETE, waiting for data";
|
---|
554 | break;
|
---|
555 |
|
---|
556 | case 'CANCELED' :
|
---|
557 | case 'CANCELLED' :
|
---|
558 | $query = "UPDATE analysis SET status='CANCELED' WHERE gfacID='$gfacID'";
|
---|
559 | $message = "Job status request reports job is CANCELED";
|
---|
560 | break;
|
---|
561 |
|
---|
562 | case 'FAILED' :
|
---|
563 | $query = "UPDATE analysis SET status='FAILED' WHERE gfacID='$gfacID'";
|
---|
564 | $message = "Job status request reports job is FAILED";
|
---|
565 | break;
|
---|
566 |
|
---|
567 | case 'UNKNOWN' :
|
---|
568 | write_log( "$loghdr job_status='UNKNOWN', reset to 'ERROR' " );
|
---|
569 | $query = "UPDATE analysis SET status='ERROR' WHERE gfacID='$gfacID'";
|
---|
570 | $message = "Job status request reports job is not in the queue";
|
---|
571 | break;
|
---|
572 |
|
---|
573 | case 'UPDATING' :
|
---|
574 | case 'PENDING' :
|
---|
575 | $message = "Job status request reports job is " . $job_status;
|
---|
576 | break;
|
---|
577 |
|
---|
578 | default :
|
---|
579 | // We shouldn't ever get here
|
---|
580 | $query = "UPDATE analysis SET status='ERROR' WHERE gfacID='$gfacID'";
|
---|
581 | $message = "Job status was not recognized - $job_status";
|
---|
582 | write_log( "$loghdr update_job_status: " .
|
---|
583 | "Job status was not recognized - $job_status\n" .
|
---|
584 | "gfacID = $gfacID\n" );
|
---|
585 | break;
|
---|
586 |
|
---|
587 | }
|
---|
588 |
|
---|
589 | $result = mysql_query( $query, $gLink );
|
---|
590 | if ( ! $result )
|
---|
591 | write_log( "$loghdr Query failed $query - " . mysql_error( $gLink ) );
|
---|
592 |
|
---|
593 | if ( $message != 'NONE' )
|
---|
594 | {
|
---|
595 | update_queue_messages( $message );
|
---|
596 | update_db( $message );
|
---|
597 | }
|
---|
598 | }
|
---|
599 |
|
---|
600 | function get_us3_data()
|
---|
601 | {
|
---|
602 | global $self;
|
---|
603 | global $gfacID;
|
---|
604 | global $dbhost;
|
---|
605 | global $user;
|
---|
606 | global $passwd;
|
---|
607 | global $us3_db;
|
---|
608 | global $updateTime;
|
---|
609 | global $loghdr;
|
---|
610 |
|
---|
611 | $us3_link = mysql_connect( $dbhost, $user, $passwd );
|
---|
612 |
|
---|
613 | if ( ! $us3_link )
|
---|
614 | {
|
---|
615 | write_log( "$loghdr could not connect: $dbhost, $user, $passwd" );
|
---|
616 | mail_to_admin( "fail", "Could not connect to $dbhost" );
|
---|
617 | return 0;
|
---|
618 | }
|
---|
619 |
|
---|
620 |
|
---|
621 | $result = mysql_select_db( $us3_db, $us3_link );
|
---|
622 |
|
---|
623 | if ( ! $result )
|
---|
624 | {
|
---|
625 | write_log( "$loghdr could not select DB $us3_db" );
|
---|
626 | mail_to_admin( "fail", "Could not select DB $us3_db, $dbhost, $user, $passwd" );
|
---|
627 | return 0;
|
---|
628 | }
|
---|
629 |
|
---|
630 | $query = "SELECT HPCAnalysisRequestID, UNIX_TIMESTAMP(updateTime) " .
|
---|
631 | "FROM HPCAnalysisResult WHERE gfacID='$gfacID'";
|
---|
632 | $result = mysql_query( $query, $us3_link );
|
---|
633 |
|
---|
634 | if ( ! $result )
|
---|
635 | {
|
---|
636 | write_log( "$self: Query failed $query - " . mysql_error( $us3_link ) );
|
---|
637 | mail_to_admin( "fail", "Query failed $query\n" . mysql_error( $us3_link ) );
|
---|
638 | return 0;
|
---|
639 | }
|
---|
640 |
|
---|
641 | list( $requestID, $updateTime ) = mysql_fetch_array( $result );
|
---|
642 | mysql_close( $us3_link );
|
---|
643 |
|
---|
644 | return $requestID;
|
---|
645 | }
|
---|
646 |
|
---|
647 | // Function to determine if this is a gfac job or not
|
---|
648 | function is_gfac_job( $gfacID )
|
---|
649 | {
|
---|
650 | $hex = "[0-9a-fA-F]";
|
---|
651 | if ( ! preg_match( "/^US3-Experiment/i", $gfacID ) &&
|
---|
652 | ! preg_match( "/^US3-$hex{8}-$hex{4}-$hex{4}-$hex{4}-$hex{12}$/", $gfacID ) )
|
---|
653 | {
|
---|
654 | // Then it's not a GFAC job
|
---|
655 | return false;
|
---|
656 | }
|
---|
657 |
|
---|
658 | return true;
|
---|
659 | }
|
---|
660 |
|
---|
661 | // Function to determine if this is an airavata/thrift job or not
|
---|
662 | function is_aira_job( $gfacID )
|
---|
663 | {
|
---|
664 | global $cluster;
|
---|
665 |
|
---|
666 | if ( preg_match( "/US3-A/i", $gfacID ) )
|
---|
667 | {
|
---|
668 | // Then it's an Airavata/Thrift job
|
---|
669 | return true;
|
---|
670 | }
|
---|
671 |
|
---|
672 | return false;
|
---|
673 | }
|
---|
674 |
|
---|
675 | // Function to get the current job status from GFAC
|
---|
676 | function get_gfac_status( $gfacID )
|
---|
677 | {
|
---|
678 | global $serviceURL;
|
---|
679 | global $self;
|
---|
680 | global $loghdr;
|
---|
681 | global $cluster;
|
---|
682 | global $status_ex, $status_gw;
|
---|
683 |
|
---|
684 | if ( is_aira_job( $gfacID ) )
|
---|
685 | {
|
---|
686 | $status_ex = getExperimentStatus( $gfacID );
|
---|
687 |
|
---|
688 | if ( $status_ex == 'EXECUTING' )
|
---|
689 | {
|
---|
690 | if ( $status_gw == 'SUBMITTED' )
|
---|
691 | $status_ex = 'QUEUED';
|
---|
692 | if ( $status_gw == 'RUNNING' )
|
---|
693 | $status_ex = 'ACTIVE';
|
---|
694 | }
|
---|
695 |
|
---|
696 | $gfac_status = standard_status( $status_ex );
|
---|
697 | write_log( "$loghdr get_gfac_status: status_ex=$status_ex gfac_status=$gfac_status" );
|
---|
698 | return $gfac_status;
|
---|
699 | }
|
---|
700 |
|
---|
701 | else if ( ! is_gfac_job( $gfacID ) )
|
---|
702 | return false;
|
---|
703 |
|
---|
704 | $url = "$serviceURL/jobstatus/$gfacID";
|
---|
705 | try
|
---|
706 | {
|
---|
707 | $post = new HttpRequest( $url, HttpRequest::METH_GET );
|
---|
708 | $http = $post->send();
|
---|
709 | $xml = $post->getResponseBody();
|
---|
710 | }
|
---|
711 | catch ( HttpException $e )
|
---|
712 | {
|
---|
713 | write_log( "$loghdr Status not available - marking failed - $gfacID" );
|
---|
714 | return 'GFAC_STATUS_UNAVAILABLE';
|
---|
715 | }
|
---|
716 |
|
---|
717 | // Parse the result
|
---|
718 | $gfac_status = parse_response( $xml );
|
---|
719 |
|
---|
720 | // This may not seem like the best place to do this, but here we have
|
---|
721 | // the xml straight from GFAC
|
---|
722 | $status_types = array('SUBMITTED',
|
---|
723 | 'SUBMITED',
|
---|
724 | 'INITIALIZED',
|
---|
725 | 'PENDING',
|
---|
726 | 'RUNNING',
|
---|
727 | 'ACTIVE',
|
---|
728 | 'STARTED',
|
---|
729 | 'COMPLETED',
|
---|
730 | 'FINISHED',
|
---|
731 | 'DONE',
|
---|
732 | 'DATA',
|
---|
733 | 'RESULTS_GEN',
|
---|
734 | 'CANCELED',
|
---|
735 | 'CANCELLED',
|
---|
736 | 'FAILED',
|
---|
737 | 'STAGING',
|
---|
738 | 'UNKNOWN');
|
---|
739 | if ( ! in_array( $gfac_status, $status_types ) )
|
---|
740 | mail_to_admin( 'debug', "gfacID: /$gfacID/\n" .
|
---|
741 | "XML: /$xml/\n" .
|
---|
742 | "Status: /$gfac_status/\n" );
|
---|
743 |
|
---|
744 | if ( in_array( $gfac_status, array( 'DONE', 'DATA', 'RESULTS_GEN' ) ) )
|
---|
745 | $gfac_status = 'DATA';
|
---|
746 |
|
---|
747 | return $gfac_status;
|
---|
748 | }
|
---|
749 |
|
---|
750 | // Function to request data outputs from GFAC
|
---|
751 | function get_gfac_outputs( $gfacID )
|
---|
752 | {
|
---|
753 | global $serviceURL;
|
---|
754 | global $self;
|
---|
755 |
|
---|
756 | // Make sure it's a GFAC job and status is appropriate for this call
|
---|
757 | if ( ( $job_status = get_gfac_status( $gfacID ) ) === false )
|
---|
758 | {
|
---|
759 | // Then it's not a GFAC job
|
---|
760 | return false;
|
---|
761 | }
|
---|
762 |
|
---|
763 | if ( ! in_array( $job_status, array( 'DONE', 'FAILED', 'COMPLETE', 'FINISHED' ) ) )
|
---|
764 | {
|
---|
765 | // Then it's not appropriate to request data
|
---|
766 | return false;
|
---|
767 | }
|
---|
768 |
|
---|
769 | $url = "$serviceURL/registeroutput/$gfacID";
|
---|
770 | try
|
---|
771 | {
|
---|
772 | $post = new HttpRequest( $url, HttpRequest::METH_GET );
|
---|
773 | $http = $post->send();
|
---|
774 | $xml = $post->getResponseBody();
|
---|
775 | }
|
---|
776 | catch ( HttpException $e )
|
---|
777 | {
|
---|
778 | write_log( "$self: Data not available - request failed - $gfacID" );
|
---|
779 | return false;
|
---|
780 | }
|
---|
781 |
|
---|
782 | mail_to_admin( "debug", "get_gfac_outputs/\n$xml/" ); // Temporary, to see what the xml looks like,
|
---|
783 | // if we ever get one
|
---|
784 |
|
---|
785 | // Parse the result
|
---|
786 | $gfac_status = parse_response( $xml );
|
---|
787 |
|
---|
788 | return $gfac_status;
|
---|
789 | }
|
---|
790 |
|
---|
791 | function parse_response( $xml )
|
---|
792 | {
|
---|
793 | global $gfac_message;
|
---|
794 |
|
---|
795 | $status = "";
|
---|
796 | $gfac_message = "";
|
---|
797 |
|
---|
798 | $parser = new XMLReader();
|
---|
799 | $parser->xml( $xml );
|
---|
800 |
|
---|
801 | while( $parser->read() )
|
---|
802 | {
|
---|
803 | $type = $parser->nodeType;
|
---|
804 |
|
---|
805 | if ( $type == XMLReader::ELEMENT )
|
---|
806 | $name = $parser->name;
|
---|
807 |
|
---|
808 | else if ( $type == XMLReader::TEXT )
|
---|
809 | {
|
---|
810 | if ( $name == "status" )
|
---|
811 | $status = $parser->value;
|
---|
812 | else
|
---|
813 | $gfac_message = $parser->value;
|
---|
814 | }
|
---|
815 | }
|
---|
816 |
|
---|
817 | $parser->close();
|
---|
818 | return $status;
|
---|
819 | }
|
---|
820 |
|
---|
821 | // Function to get status from local cluster
|
---|
822 | function get_local_status( $gfacID )
|
---|
823 | {
|
---|
824 | global $cluster;
|
---|
825 | global $self;
|
---|
826 |
|
---|
827 | $system = "$cluster.uthscsa.edu";
|
---|
828 | $system = preg_replace( "/\-local/", "", $system );
|
---|
829 | $cmd = "/usr/bin/ssh -x us3@$system qstat -a $gfacID 2>&1";
|
---|
830 |
|
---|
831 | $result = exec( $cmd );
|
---|
832 |
|
---|
833 | if ( $result == "" || preg_match( "/^qstat: Unknown/", $result ) )
|
---|
834 | {
|
---|
835 | write_log( "$self get_local_status: Local job $gfacID unknown" );
|
---|
836 | return 'UNKNOWN';
|
---|
837 | }
|
---|
838 |
|
---|
839 | $values = preg_split( "/\s+/", $result );
|
---|
840 | // write_log( "$self: get_local_status: job status = /{$values[9]}/");
|
---|
841 | switch ( $values[ 9 ] )
|
---|
842 | {
|
---|
843 | case "W" : // Waiting for execution time to be reached
|
---|
844 | case "E" : // Job is exiting after having run
|
---|
845 | case "R" : // Still running
|
---|
846 | $status = 'ACTIVE';
|
---|
847 | break;
|
---|
848 |
|
---|
849 | case "C" : // Job has completed
|
---|
850 | $status = 'COMPLETED';
|
---|
851 | break;
|
---|
852 |
|
---|
853 | case "T" : // Job is being moved
|
---|
854 | case "H" : // Held
|
---|
855 | case "Q" : // Queued
|
---|
856 | $status = 'SUBMITTED';
|
---|
857 | break;
|
---|
858 |
|
---|
859 | default :
|
---|
860 | $status = 'UNKNOWN'; // This should not occur
|
---|
861 | break;
|
---|
862 | }
|
---|
863 |
|
---|
864 | return $status;
|
---|
865 | }
|
---|
866 |
|
---|
867 | function update_queue_messages( $message )
|
---|
868 | {
|
---|
869 | global $self;
|
---|
870 | global $gLink;
|
---|
871 | global $gfacID;
|
---|
872 |
|
---|
873 | // Get analysis table ID
|
---|
874 | $query = "SELECT id FROM analysis " .
|
---|
875 | "WHERE gfacID = '$gfacID' ";
|
---|
876 | $result = mysql_query( $query, $gLink );
|
---|
877 | if ( ! $result )
|
---|
878 | {
|
---|
879 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
|
---|
880 | return;
|
---|
881 | }
|
---|
882 | list( $analysisID ) = mysql_fetch_array( $result );
|
---|
883 |
|
---|
884 | // Insert message into queue_message table
|
---|
885 | $query = "INSERT INTO queue_messages SET " .
|
---|
886 | "message = '" . mysql_real_escape_string( $message, $gLink ) . "', " .
|
---|
887 | "analysisID = '$analysisID' ";
|
---|
888 | $result = mysql_query( $query, $gLink );
|
---|
889 | if ( ! $result )
|
---|
890 | {
|
---|
891 | write_log( "$self: Query failed $query - " . mysql_error( $gLink ) );
|
---|
892 | return;
|
---|
893 | }
|
---|
894 | }
|
---|
895 |
|
---|
896 | function update_db( $message )
|
---|
897 | {
|
---|
898 | global $self;
|
---|
899 | global $gfacID;
|
---|
900 | global $dbhost;
|
---|
901 | global $user;
|
---|
902 | global $passwd;
|
---|
903 | global $us3_db;
|
---|
904 |
|
---|
905 | $us3_link = mysql_connect( $dbhost, $user, $passwd );
|
---|
906 |
|
---|
907 | if ( ! $us3_link )
|
---|
908 | {
|
---|
909 | write_log( "$self: could not connect: $dbhost, $user, $passwd" );
|
---|
910 | mail_to_admin( "fail", "Could not connect to $dbhost" );
|
---|
911 | return 0;
|
---|
912 | }
|
---|
913 |
|
---|
914 |
|
---|
915 | $result = mysql_select_db( $us3_db, $us3_link );
|
---|
916 |
|
---|
917 | if ( ! $result )
|
---|
918 | {
|
---|
919 | write_log( "$self: could not select DB $us3_db" );
|
---|
920 | mail_to_admin( "fail", "Could not select DB $us3_db, $dbhost, $user, $passwd" );
|
---|
921 | return 0;
|
---|
922 | }
|
---|
923 |
|
---|
924 | $query = "UPDATE HPCAnalysisResult SET " .
|
---|
925 | "lastMessage='" . mysql_real_escape_string( $message, $us3_link ) . "'" .
|
---|
926 | "WHERE gfacID = '$gfacID' ";
|
---|
927 |
|
---|
928 | mysql_query( $query, $us3_link );
|
---|
929 | mysql_close( $us3_link );
|
---|
930 | }
|
---|
931 |
|
---|
932 | function mail_to_admin( $type, $msg )
|
---|
933 | {
|
---|
934 | global $updateTime;
|
---|
935 | global $status;
|
---|
936 | global $cluster;
|
---|
937 | global $org_name;
|
---|
938 | global $admin_email;
|
---|
939 | global $dbhost;
|
---|
940 | global $requestID;
|
---|
941 |
|
---|
942 | $headers = "From: $org_name Admin<$admin_email>" . "\n";
|
---|
943 | $headers .= "Cc: $org_name Admin<$admin_email>" . "\n";
|
---|
944 | $headers .= "Bcc: Gary Gorbet<gegorbet@gmail.com>" . "\n"; // make sure
|
---|
945 |
|
---|
946 | // Set the reply address
|
---|
947 | $headers .= "Reply-To: $org_name<$admin_email>" . "\n";
|
---|
948 | $headers .= "Return-Path: $org_name<$admin_email>" . "\n";
|
---|
949 |
|
---|
950 | // Try to avoid spam filters
|
---|
951 | $now = time();
|
---|
952 | $headers .= "Message-ID: <" . $now . "gridctl@$dbhost>$requestID\n";
|
---|
953 | $headers .= "X-Mailer: PHP v" . phpversion() . "\n";
|
---|
954 | $headers .= "MIME-Version: 1.0" . "\n";
|
---|
955 | $headers .= "Content-Transfer-Encoding: 8bit" . "\n";
|
---|
956 |
|
---|
957 | $subject = "US3 Error Notification";
|
---|
958 | $message = "
|
---|
959 | UltraScan job error notification from gridctl.php:
|
---|
960 |
|
---|
961 | Update Time : $updateTime
|
---|
962 | GFAC Status : $status
|
---|
963 | Cluster : $cluster
|
---|
964 | ";
|
---|
965 |
|
---|
966 | $message .= "Error Message : $msg\n";
|
---|
967 |
|
---|
968 | mail( $admin_email, $subject, $message, $headers );
|
---|
969 | }
|
---|
970 |
|
---|
971 | // Convert a status string to one of the standard DB status strings
|
---|
972 | function standard_status( $status_in )
|
---|
973 | {
|
---|
974 | switch ( $status_in )
|
---|
975 | { // Map variations to standard gateway status values
|
---|
976 | case 'QUEUED' :
|
---|
977 | case 'LAUNCHED' :
|
---|
978 | case 'CREATED' :
|
---|
979 | case 'VALIDATED' :
|
---|
980 | case 'SCHEDULED' :
|
---|
981 | case 'submitted' :
|
---|
982 | case '' :
|
---|
983 | $status = 'SUBMITTED';
|
---|
984 | break;
|
---|
985 |
|
---|
986 | case 'EXECUTING' :
|
---|
987 | case 'ACTIVE' :
|
---|
988 | case 'running' :
|
---|
989 | case 'executing' :
|
---|
990 | $status = 'RUNNING';
|
---|
991 | break;
|
---|
992 |
|
---|
993 | case 'PENDING' :
|
---|
994 | case 'CANCELING' :
|
---|
995 | $status = 'UPDATING';
|
---|
996 | break;
|
---|
997 |
|
---|
998 | case 'CANCELLED' :
|
---|
999 | case 'canceled' :
|
---|
1000 | $status = 'CANCELED';
|
---|
1001 | break;
|
---|
1002 |
|
---|
1003 | case 'COMPLETED' :
|
---|
1004 | case 'completed' :
|
---|
1005 | $status = 'COMPLETE';
|
---|
1006 | break;
|
---|
1007 |
|
---|
1008 | case 'FAILED_DATA' :
|
---|
1009 | case 'SUBMIT_TIMEOUT' :
|
---|
1010 | case 'RUN_TIMEOUT' :
|
---|
1011 | case 'DATA_TIMEOUT' :
|
---|
1012 | $status = 'FAILED';
|
---|
1013 | break;
|
---|
1014 |
|
---|
1015 | case 'COMPLETE' :
|
---|
1016 | $status = 'DONE';
|
---|
1017 | break;
|
---|
1018 |
|
---|
1019 | case 'UNKNOWN' :
|
---|
1020 | $status = 'ERROR';
|
---|
1021 | break;
|
---|
1022 |
|
---|
1023 | // Where already standard value, retain value
|
---|
1024 | case 'ERROR' :
|
---|
1025 | case 'RUNNING' :
|
---|
1026 | case 'SUBMITTED' :
|
---|
1027 | case 'UPDATING' :
|
---|
1028 | case 'CANCELED' :
|
---|
1029 | case 'DATA' :
|
---|
1030 | case 'FAILED' :
|
---|
1031 | case 'DONE' :
|
---|
1032 | case 'FINISHED' :
|
---|
1033 | default :
|
---|
1034 | $status = $status_in;
|
---|
1035 | break;
|
---|
1036 | }
|
---|
1037 |
|
---|
1038 | return $status;
|
---|
1039 | }
|
---|
1040 |
|
---|
1041 | function aira_status( $gfacID, $status_in )
|
---|
1042 | {
|
---|
1043 | global $self;
|
---|
1044 | global $loghdr;
|
---|
1045 | global $class_dir;
|
---|
1046 | //echo "a_st: st_in$status_in : $gfacID\n";
|
---|
1047 | //$status_gw = standard_status( $status_in );
|
---|
1048 | $status_gw = $status_in;
|
---|
1049 | //echo "a_st: st_db=$status_gw\n";
|
---|
1050 | $status = $status_gw;
|
---|
1051 | $me_devel = preg_match( "/class_devel/", $class_dir );
|
---|
1052 | $job_devel = preg_match( "/US3-ADEV/i", $gfacID );
|
---|
1053 | $devmatch = ( ( !$me_devel && !$job_devel ) ||
|
---|
1054 | ( $me_devel && $job_devel ) );
|
---|
1055 |
|
---|
1056 | //write_log( "$loghdr gfacID=$gfacID devmatch=$devmatch" );
|
---|
1057 | //write_log( "$loghdr me_d=$me_devel jo_d=$job_devel cd=$class_dir" );
|
---|
1058 | if ( preg_match( "/US3-A/i", $gfacID ) && $devmatch )
|
---|
1059 | { // Airavata job and development/production type is right
|
---|
1060 | $status_ex = getExperimentStatus( $gfacID );
|
---|
1061 | //write_log( "$loghdr status_ex $status_ex" );
|
---|
1062 |
|
---|
1063 | if ( $status_ex == 'COMPLETED' )
|
---|
1064 | { // Experiment is COMPLETED: check for 'FINISHED' or 'DONE'
|
---|
1065 | if ( $status_gw == 'FINISHED' || $status_gw == 'DONE' )
|
---|
1066 | { // COMPLETED + FINISHED/DONE : gateway status is now COMPLETE
|
---|
1067 | $status = 'COMPLETE';
|
---|
1068 | }
|
---|
1069 |
|
---|
1070 | else
|
---|
1071 | { // COMPLETED + NOT-FINISHED/DONE: gw status now DONE
|
---|
1072 | $status = 'DONE';
|
---|
1073 | }
|
---|
1074 | }
|
---|
1075 |
|
---|
1076 | else if ( $status_gw == 'FINISHED' || $status_gw == 'DONE' )
|
---|
1077 | { // Gfac status == FINISHED/DONE: leave as is (unless FAILED)
|
---|
1078 | $status = $status_gw;
|
---|
1079 | if ( $status_ex == 'FAILED' )
|
---|
1080 | {
|
---|
1081 | sleep( 10 );
|
---|
1082 | $status_ex = getExperimentStatus( $gfacID );
|
---|
1083 | if ( $status_ex == 'FAILED' )
|
---|
1084 | {
|
---|
1085 | write_log( "$loghdr status still 'FAILED' after 10-second delay" );
|
---|
1086 | sleep( 10 );
|
---|
1087 | $status_ex = getExperimentStatus( $gfacID );
|
---|
1088 | if ( $status_ex == 'FAILED' )
|
---|
1089 | write_log( "$loghdr status still 'FAILED' after 20-second delay" );
|
---|
1090 | else
|
---|
1091 | write_log( "$loghdr status is $status_ex after 20-second delayed retry" );
|
---|
1092 | }
|
---|
1093 | write_log( "$loghdr status reset to 'COMPLETE'" );
|
---|
1094 | $status = 'COMPLETE';
|
---|
1095 | }
|
---|
1096 | }
|
---|
1097 |
|
---|
1098 | else
|
---|
1099 | { // Experiment not COMPLETED/FINISHED/DONE: use experiment status
|
---|
1100 | $status = standard_status( $status_ex );
|
---|
1101 | }
|
---|
1102 |
|
---|
1103 | if(preg_match("/US3-A/i",$gfacID))
|
---|
1104 | //if(preg_match("/US3-ADEV/i",$gfacID))
|
---|
1105 | write_log( "$loghdr status/_in/_gw/_ex=$status/$status_in/$status_gw/$status_ex" );
|
---|
1106 | //write_log( "$loghdr status/_in/_gw/_ex=$status/$status_in/$status_gw/$status_ex" );
|
---|
1107 | //write_log( " me_d=$me_devel jo_d=$job_devel dm=$devmatch cd=$class_dir" );
|
---|
1108 | if ( $status != $status_gw )
|
---|
1109 | {
|
---|
1110 | update_job_status( $status, $gfacID );
|
---|
1111 | }
|
---|
1112 | }
|
---|
1113 |
|
---|
1114 | return $status;
|
---|
1115 | }
|
---|
1116 |
|
---|
1117 | ?>
|
---|