wiki:paramDir

param directory

As of 7 June 2010, this directory contains the following files:

 40K allatom.par
 49M bbdep02.May.lib
508K bbdep02.May.PHI-PSI-AA-DIST
 40K bbind02.May.lib
 32K cedutop.pro
 36K DMD-MOL-allatom.par
376K DMD-MOL-MEDUSA.param
 28K DMD_NA_allatom.par
 56K DMD_NA_MEDUSA.param
4.0K medupar.charge
8.0K medupar_molecule.nonb
 20K medupar.nonb
 52K medutop.pro
396K PRO_RNA_MOL.DMDParam

Files required by run examination (only complex and complex_M2P seem to require this)

 medutop.pro (only file required by complex_M2P)
 PRO_RNA_MOL.DMDParam
 allatom.par
 DMD_NA_allatom.par (this one doesn't seem to be necessary)
  • .par files contain parameters to identify bonds, angles and dihedrals from PDB files
  • .pro files contain topology information
  • .param files contain DMD types
  • .lib files are of various content
  • .charge file contains information for charged interaction
  • .nonb files contain info for non-binding interaction
Last modified 8 years ago Last modified on Nov 10, 2010 1:43:48 PM